RNA id: TU110863


Basic Information

Item Value
RNA id TU110863
length 330
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G74914
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5107785 ~ 5108114 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAATCAGCAGATACTTGTGCCTCATGGTCAAAGAGTCAAAGAAACTTGCAAAAGGACACGTAAATGATGAAAGTAGCTTATGATTTGATCCTGAGAAATTCCATACAAGTTTTTGAGGCTCTTCAGAAGTTCTTCTTCAGGCTCCTATCCAACTATCGTTGTTTCTTTGGAAAAACTATCTAAATTTGTCCCTTATCAtccatcaaaaaaaacaaataacgaaacataaaaatgatttatttttgattccCTCTTCTTCTCAGTCTTGCTCTCAGACTAGGTCTTGTGTGTCTCTTGCTGACTGTAACGCTGAACAAGCCTGAAGTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110857 lncRNA upstream 9221 5097644 ~ 5098564 (+) True G74908
TU110855 lncRNA upstream 20194 5087280 ~ 5087591 (+) True G74906
TU110849 lncRNA upstream 33579 5073928 ~ 5074206 (+) True G74902
TU110831 lncRNA upstream 86984 5019196 ~ 5020801 (+) True G74889
TU110852 lncRNA downstream 8752 5116866 ~ 5117649 (+) False LOC122352404
TU110922 lncRNA downstream 127485 5235599 ~ 5235955 (+) True G74958
XR_006251886.1 lncRNA downstream 130165 5238279 ~ 5239558 (+) False LOC122352567
XR_006251887.1 lncRNA downstream 130165 5238279 ~ 5239558 (+) False LOC122352567
TU110997 lncRNA downstream 275025 5383139 ~ 5385855 (+) True G74992
XM_043250823.1 mRNA upstream 40248 5058497 ~ 5067537 (+) False LOC122352997
XM_043250822.1 mRNA upstream 40248 5059768 ~ 5067537 (+) True LOC122352997
XM_043250595.1 mRNA upstream 58636 5046251 ~ 5049149 (+) True si:dkey-210j14.3
XM_043250592.1 mRNA upstream 62247 5038850 ~ 5045538 (+) True LOC122352867
XM_043250593.1 mRNA upstream 62665 5038846 ~ 5045120 (+) False LOC122352867
XM_043249821.1 mRNA downstream 9735 5117849 ~ 5123373 (+) True LOC122352404
XM_043251132.1 mRNA downstream 224896 5333010 ~ 5357455 (+) True sppl3
XM_043250805.1 mRNA downstream 303569 5411683 ~ 5446436 (+) True kcnn2
XM_043250803.1 mRNA downstream 303570 5411684 ~ 5446436 (+) False kcnn2
XM_043250804.1 mRNA downstream 303570 5411684 ~ 5444613 (+) False kcnn2
TU110461 other upstream 607685 4496574 ~ 4500100 (+) False LOC122352783
TU110470 other upstream 987338 4075338 ~ 4120447 (+) False LOC122352388
TU110458 other upstream 1060831 4043587 ~ 4046954 (+) False LOC122352388
TU110456 other upstream 1065091 4013060 ~ 4042694 (+) False LOC122352388
TU110241 other upstream 1413189 3669023 ~ 3694596 (+) True cdc42se2
TU110851 other downstream 9737 5117851 ~ 5120654 (+) False LOC122352404
TU110913 other downstream 13375 5121489 ~ 5123272 (+) False LOC122352404
TU110926 other downstream 130314 5238428 ~ 5250137 (+) False LOC122352567
TU110925 other downstream 136476 5244590 ~ 5250137 (+) True LOC122352567
TU110943 other downstream 148724 5256838 ~ 5258823 (+) True G74965

Expression Profile