RNA id: XM_043249781.1


Basic Information

Item Value
RNA id XM_043249781.1
length 3278
RNA type mRNA
GC content 0.44
exon number 13
gene id LOC122352369
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5019307 ~ 5028513 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTAACGCGCTCGTCTTCCAAACTGCAGTGTTGTCAATGCAGGCAGATTTTGGTCGGCggaattatttaaactaaagtTACCCGTGTTAACTTTCTGCCTCTGGGTGTAACAGTGTGGTTTTGCTTCGAGGGCTCGTATGCCTGTTTGTAAAGAGCGCTCGCTGTACAATGCTCCGCTTCGTGTTGTCGGTGTCGGCGCTGTGGTCCTGTTTGATGAACTCCGGACCAGCTGAAGGATACTTCCACGAAGAGCGCTGGAGCCCGGAGTCTCCTATATTAGCTCCCCGAGTAATGATCGCTCTCATCTGCCGTAACGCCCAGCACTCGCTGCCGCATTTCCTCGGTACTATCGAGCGCCTCGATTACCCTAAAGACCGGATCGCGCTGtgGGTGGCAACTGACCACAATATTGACAACACTACTTACCTGCTGCGAGACTGGCTCATCAATGTACAGAAACTATATCATAATGTGGAGTGGAGGCCAAAGGAGGAACCAAGGAAATATTATGATGAGGGAGGACCGAAGGATTGGACGAATGAGCGCTACGCCTACATCATGAAACTGCGGCAGGCAGCGCTCGAGTCTGCACGTGAGATGTGGGCAGACTATCTGATGaTGATTGATTGTGATAACCTCCTGATCAACCGAGACGTCTTGTGGAAgctgataaaagaaaacaagacaattgTGGCACCAATGATGGAGTCTCGTGCTGCATATTCAAACTTCTGGTGTGGAATGACATCCCAGGGCTACTATAAACGAACGCCTGCCTACATCCCCATGCGCAAGCAAGTGCGTAGAGGTTGCTTTGCAGTTCCCATGGTGCACTCCACTTACCTGGTTGATCTGCGGAAAGAAGCCTCCAGAATGCTTGCTTTTCACCCGCCACATCCAGACTACACCTGGGCCTTTGACGACATTATAGTCTTTGCTTTTTCAGCCCGGATGGCAGAGGTacaaatgtttctttgtaaCAGGGAGATTTATGGGCACCTCCCAGTGCCTCTTCGAGCtcacagcaccatgcaggacgaAGCAGACAGCTTCATTCATACTTTGATGGAGGTCAATGTGCGAAATCCTCCAGTTGAGCCTTCCAGATACTTGCCCAAACCTGTCAAAAGACCTGACAAAATGGACTTTGATGAGGTGTTTATGATCAACCTGAAGCGGCGGGTCGACCGTCGTGAGCGCATGCTAAGGTCCCTGAGAGAGCAAGAAATTGCCTGCAAGATTATAGCAGCTGTTGATGGCAAAGCTATGAACGTCAGTGAGATCAATGCTATGGCAATCCACATGCTTCCCGGCTACAGTGACCCCTACCATGGCAGACCTCTGACAAGAGGAGAGCTGGGCTGCTTCCTGTCCCACTATAACATCTGGAAAGAGATTGCAGACAGAGGCCTGAAGACCTCGCTGGTGCTTGAAGATGATTTGCGGTTTGAGATTTTCTTCAAGCGCCGCCTGCAGAATCTGATGCGAGAGGTGGAGAGTAAGGGTCTGGACTGGGACCTCATttaTATTGGGAGGAAGAGGATGCAGGTGGACCGACCAGAGAAGGCAGTACCAAACATTCGCAACTTGGTGGAGGCGGACTATTCCTATTGGACCTTGGGCTACATGATGTCATTACAAGGAGCCAAAAAGCTCCTCAAAGCAGAACCACTCAGTAAAATGTTACCTGTGGACGAGTTCCTTCCTATTATGTTTAATAAGCATCCTGTATCGGATTACATGGATCAGTTTGAGCGAGAGGACCTGAAAGCATTTTCAGCAGAGCCCTTGCTTGTGTTTCCTACACATTACACGGGTGAACCTGGGTACATCAGTGACACAGAAACCTCCACTGTGTGGGACAATGAGAAAGTGCGCACAGACTGGGACAGGAAGCGCTCGGGTAAAACCCGGGAACAGGCTGAAATCAGCACAGAGGCCCAAAACTCAGATGTGCTCCAGTCTCCTCTGGACAGAACAGCTCGAGACGAACTATGAGAGAAATTGTTTTGGACACACCATTAGACTTGCTTCTGGGGGCAAAGTCCTCCGCTCTATAAGCACAATATATCTGACCAGAAGAGGCATTttcagaaattttttttttatgtttgcctgaaaaaaatatatttttgcgtTTAATCATTTGTCCCTTTTATTTGGAGATCAAATTTGCCGGACTGCGCTTTCTGATCTGTTCTTCACTGTATCCTGTGATTTAAAAACACCAGGAACATTCCTGAATATCTTCTTAGGAGAGAAGTTAGCAGGTATACTAAATGTAAAGTTTGTAAGGATGTACTTAAGGGCAAGTCTTGAAAGATTCATATAGAattagttcacctaaaaataaaaaaaaatgactgaaaatgtactcaccctcaggccatccgtgATATAGAGGACTTTGTTCTTCACCAGAGccgatttggagaaattcaACATTATTTCACTtactcaccaatggatcctctgcagtgaaggggtgccgtcaggatgagagtCCCAaagagctgattaaaaacatcaattaacatcttgtgaagttaAAAGCTTTgggtttgtaagaaacaaatgcattattatggcattttaactttaaatcatGACTTCTGGCCACAATATGTGTTCATAATCCATAACGTCCTCCAGCCTTGTCTAAAACATGAGAATGTGCACAGATtagtatgaataataatatgttggtggattttgattAGAGAGGACGACAGGAGATGGATGTTTTCACTGGAGGAAACTTTATTATAGGGCTTATGTATTATGTCCAGAAGTGCCCTAATAATAGATCTGTTTATATGAATTACATAACGCATTAACTGATAGACTCAAGTcgtgtggattattctgatgtttttatcagctgttttgactctcattctgacggcacccattcactacagaggatctACTGCTGAGCAAATGATACAACTCTAAATTCTTTTAATCCTTCTTAGgttaaaaaataagaagaaaacagGAGCTATGAAGGATTTTATCTTAAGGATATTTTGTTAATCTGTCCACTGATGTTTTTAGAACAGTTCAAtcaatctgaaagaaaaaaaacctgaaataatCACACgtaactaatatttttttatgcggTGTTCACAATCCAGAAATGAACGTAGTCGttcttaacaataataaaagagaCATGAAACATGTTGTTATTGTAAGGCATGAAGCATGTTATTTTAACTTGAAggatgttgttatttttaggcCTTGTGATACCATTAACCTCTTCGGTGGTG

Function

GO: NA

KEGG:

id description
K11703 GLT25D; collagen beta-1,O-galactosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110866 lncRNA downstream 57074 4961570 ~ 4962233 (-) True G74915
TU110807 lncRNA downstream 91690 4927205 ~ 4927617 (-) True G74869
TU110797 lncRNA downstream 114838 4903977 ~ 4904469 (-) True G74861
TU110793 lncRNA downstream 122220 4891594 ~ 4897087 (-) False G74858
TU110897 lncRNA upstream 30001 5058514 ~ 5059679 (-) True G74935
TU110898 lncRNA upstream 32087 5060600 ~ 5061090 (-) True G74936
TU110899 lncRNA upstream 35357 5063870 ~ 5064146 (-) True G74937
TU110906 lncRNA upstream 51435 5079948 ~ 5080179 (-) True G74943
TU110907 lncRNA upstream 67115 5095628 ~ 5096028 (-) True G74944
XM_043249808.1 mRNA downstream 2156 5000684 ~ 5017151 (-) True LOC122352400
XM_043250037.1 mRNA downstream 108125 4905881 ~ 4911182 (-) True ubxn8
XM_043251104.1 mRNA downstream 151728 4833626 ~ 4867579 (-) False LOC122353167
XM_043251100.1 mRNA downstream 151729 4823464 ~ 4867578 (-) False LOC122353167
XM_043250004.1 mRNA upstream 792 5029305 ~ 5031460 (-) False LOC122352563
XM_043250003.1 mRNA upstream 792 5029305 ~ 5031327 (-) False LOC122352563
XM_043250005.1 mRNA upstream 792 5029305 ~ 5031308 (-) True LOC122352563
XM_043250598.1 mRNA upstream 21485 5049998 ~ 5053764 (-) True LOC122352871
XM_043250013.1 mRNA upstream 219647 5248160 ~ 5252719 (-) True ywhah
XR_006251921.1 other downstream 1106565 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 1106565 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 1411519 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 1679378 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 2821996 2194115 ~ 2197311 (-) False LOC122352692
TU111527 other upstream 1510021 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 1599912 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 1599917 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 2148811 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 2149238 7177751 ~ 7180821 (-) True G75454

Expression Profile