RNA id: TU110919


Basic Information

Item Value
RNA id TU110919
length 1019
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G74955
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5136158 ~ 5137176 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCAAAGTTGGGTCCTTCTTTAGCCTCTTTCCTAGAAGATCTAATCGATGCTTGGCCATTGTGTAGTTATTGGGTAGTTGTGGTGGACGTTCTTTGAATGGGATTGGAAGTGTGTAATGACCTTCCTCTTTGACTGCTTGTTTGTTCCATAGGGCCACAACTTGTTCGTCAACTACTGACAGCGAGTCATTGTTCACATACACTGGGTCATCCAACTTCCAAAATCTTTCAACAGCTTGTTGTAGAGAATGGTCAGCTCGAATGAAGTTGGCAGAAACAGACGTAGAGCCATCTGCTACTGGTCCATGGAGTGTCCATCCCAGGCCAGTCAGAATTGCGTATGGTTCGCCAGACTCACCACAGCATGTGTCACGGGGTTTAAGTATGTCTGGTTGGTCTAGACCTATTAGCAAGTGAACCTCATTAGCTAGATCAGCATCGGGTAAACTGATTTCATCCGCAATTTCCATAGATGTGACCACTGAAACACTTCCTGCTGTGTGACTAGGCTGTCCAGACTTATGTTCAGGTTGTCCCGACAGAGCACTCCTTTCATTAGGAAAGAGTTTCTTTGTTGAGCATCTTCAACTTGTAGATCAACTGCTAAGGTAACTACGTTGAGGTTTTTGGTCTCCATAGTGTTCAGTTTAACGTTCATTTTGCGTGATTCCAATTTAAGAGCATGAACAAGCTTCTTAGATGCAAAGGTCCCATTGGAGCCACTATCAAGCAAAGCAAAGACATTCATAGAGAATTGCTTGTGTCTGTCTGAAACCACAACAGGCAGGATAGGAAGTGCAATCTTCTTTTGACTGATGTCAATGCATTTTCTGGTGGCATGCGTTTGAATGGCTTGTGGCGGGTCAACAACTGGCTCATCTTCGGTGGCTTGGTTAGTAGATTGGTCTTTGTCATTGTTAGAAGCTACAATGGCAGAATGTAGCCAGCTGTTGTGCCTTTTCCCACATCCAGGCACCTTGCATACCCAGCTGCGAGAACAGACTGCAGCGCGGTGACCC

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110878 lncRNA downstream 34739 5097644 ~ 5101419 (-) True G74923
TU110907 lncRNA downstream 40130 5095628 ~ 5096028 (-) True G74944
TU110906 lncRNA downstream 55979 5079948 ~ 5080179 (-) True G74943
TU110899 lncRNA downstream 72012 5063870 ~ 5064146 (-) True G74937
TU110898 lncRNA downstream 75068 5060600 ~ 5061090 (-) True G74936
TU110921 lncRNA upstream 391 5137567 ~ 5139459 (-) True G74957
TU110923 lncRNA upstream 98430 5235606 ~ 5235949 (-) True G74959
TU111028 lncRNA upstream 244400 5381576 ~ 5451970 (-) True G75019
TU111074 lncRNA upstream 361307 5498483 ~ 5500310 (-) True G75049
TU111102 lncRNA upstream 421766 5558942 ~ 5559159 (-) True G75065
XM_043250598.1 mRNA downstream 82394 5049998 ~ 5053764 (-) True LOC122352871
XM_043250004.1 mRNA downstream 104698 5029305 ~ 5031460 (-) False LOC122352563
XM_043250003.1 mRNA downstream 104831 5029305 ~ 5031327 (-) False LOC122352563
XM_043250005.1 mRNA downstream 104850 5029305 ~ 5031308 (-) True LOC122352563
XM_043249781.1 mRNA downstream 107645 5019307 ~ 5028513 (-) True LOC122352369
XM_043250013.1 mRNA upstream 110984 5248160 ~ 5252719 (-) True ywhah
XM_043250012.1 mRNA upstream 115861 5253037 ~ 5274154 (-) False depdc5
XM_043250011.1 mRNA upstream 115861 5253037 ~ 5274154 (-) False depdc5
XM_043250007.1 mRNA upstream 115861 5253037 ~ 5274154 (-) False depdc5
XM_043250009.1 mRNA upstream 115861 5253037 ~ 5274154 (-) False depdc5
XR_006251921.1 other downstream 1223416 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 1223416 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 1528370 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 1796229 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 2938847 2194115 ~ 2197311 (-) False LOC122352692
TU111527 other upstream 1401358 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 1491249 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 1491254 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 2040148 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 2040575 7177751 ~ 7180821 (-) True G75454

Expression Profile