RNA id: TU110925


Basic Information

Item Value
RNA id TU110925
length 3526
RNA type TUCP
GC content 0.44
exon number 4
gene id LOC122352567
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5238279 ~ 5250137 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAGCACTAAGGAATTCCTCCCTACTCTGAGACTAACACCGTTCACTGTTGAAAGCCAGAGGAGCCACTTCCAGAGGAACCTCCCTCGATGGAGGAAGTTGACTTGGTCAGGGTGGTACCAGAGACTCCGGCTGCTCCCACTGGGTTAGCAAGTTGGGACACGGTGGTGGTAAATTCCAATTCACTAGAGCCTGTGGTGGATGCAGGGGCTGGGATGCCTGTGGCTCCTGGACCATCAAGGCAGGACACCGTAAGTCAATTACTTTTGACTGATTCTGGTCTTTTAGGTCACCTGTACAGTGATGGGGCAGTGAGACGGTCTAGGCGGACCACTGCAGGTCATCATTCTAATCGTAATCATCTTCCTAGGGCCGTGGGGAGGGTAGCAAGTGTTGAGACTGAGGCCTCAACCAGTTCTATATCTGCATTGTTAGGTCAGTTAGACTAATCGTCGGGGCGACGATTCAAGAGCTGGGGGTAGATTGTGGCAAGGTGGGTGACAATCTAACCTTATTTGTTCATTGGCGTGTGATTGTCACCCACAATAGCCAATGAGATTGTGCCTTTACAGTATTTAAGGCTGGAGTCATGTCACCTGGTGTGCGTCACCGCTGGGACTGCTTTTGATAGAGTGCGCATGTGCAGAGGGTGCGTGGTCTCTGTGGTATGTAGCAGTTAATGGAGGAGTGGGTATGAGGATTAAAAGTAGATCTTTTCTTCCCCTAGCGCGCAAAGTGGCTGGTTGATACTTTGTTCTGGTTACAGGCTGTCCACCATATGTCAGTTGTGGATCCTTTCGTGTCTTTCCTGCATAATCTTTTGTGAGTTGTGAGCAGCGGTAAAACTTGTGCTTATAATAATCCGCTTTTTGtgcGTTGACGTCTTTCCGATGCCGCACGTCTAGTTACGAGAATGCGGAAGTGTTTACACGGCGTTTAAAAGGACGgcgctgctgtttttctcctttttctttggGACTTTCTTTtcgttttattttcctttttgtggTATGCCCACtgttatgttattaattttgtttgcatCTGTTTATCGTCATCATTTAAAACTGATCAAGACGGGGTTGGTTGCACCGGTGACTTTTACCGGTGCTGTGAAAAGTGTCCTGATGCAACTTTGACTTTTTGATAACCTGATTGCTGACCCTATCGCTCCAGTGAGAATTTGAACTGTTCCATCCAGTATTTgggtccctttttttttttttgctttgaatattTCTGTAGGTTTAATTTGATGGAAATATCTTGACTGTATTACCGaatgtaatattacttttctcttgttttggctTGCTCTAGGCACTGTCGGTCCCTGAGGCTAGGAGGCTAGTTAGCTTCGAGTATTGGTGGTGGTATAATCGCGTGGAGTGCAGTGCTGCTTGGATTCACCtttcacagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgcacgAGTGCGCCATTAGGATCCTCACTTCGCCTAGCCTGCCCTTGCCGTTGGAAAGCCTgtgctgtatctttttttttttttttttttttttttttTTTTGAGAGTTCCCATGGTAAgcaatgtctttaatgtcattCTTACATAACCTTGCATATGTAATCCTAATCAAAAGACTTTTGATCACTGCATCTCATAACAGAGTACCGCCCACATTTTTGATGACAGCATACTGTTGTGAGATAGCAGATACACACAATTCACAGGGCTAGCAAGGTGTACAAGGTGATCAAGGGGGAACGACAGACAAACACATCTACGCAGTGATTGAGGTACAGATCAAAGACAAGTGAAGAAGAACAAcataataaagtgtaacattaGCAATATACTGTGCCACCTACTCAAGATCTCATCCTGTAATAAGTGTTACAGTGTTTCTACGAAGATCGAGTCCTTACAAGTACACACTAAATTAATGTCACTTGGAGACCAGCAGGCTATCAGCGACTCATTGCGGGGAGAAAGGAGTGAATCGTATACAGAAAAAGAGGTAAAGGACAAGAAGAGAGGAATAGGTTGGAAAACTGAGAAAAGTGGATTAATACCCCTTTTTCACCAAAATGGTGTCAGAACTAGCTTAAAGGGTGAACAATGATGCAACTTGTTTACTTGtaatatttaagagaaatatttaaccaaaaaatgtattttatatgctaTAAATGATCTAAATTCATTTATATCACAAATAATACATAACTATTTGtgtatacatttcaaaatcatttcatttatttatgtttttaaagattacattCAAACATCCAAAGCAATTTGAATCATTGTATTTACGCTGTCAAATTTACATTATGCTAACAGCTAATTTGCATGTATgatattcagaaataatttggtttttataaaagttttttactttttacgaATTACAGTCCATTTTAACATCCAAAGCACATCACAGGTGATGtataagggaaaaaaattacaacatgCGTCAACTGAatgctttatatattataatggaATGGGCATTGTTTggttttatatttgcattagcATTGAAAACTTGGACAAGCAACATTATCCAGGTTCGAAACAAGCAGGTTTTTGAGGCCAACAGCATTTTTTCATCCCAGAACCGCCTTTTCTGCAGTGGAACGGTTCCAGTTTGTGTATCGGCATCCTGTTGGTGGAAAAGGGGTAAAAGATATGAGAGAGCAATCAAGGGTCTGAAGTGCTGCCCTGAGGAACCAAAGAAGAGCATTGAGGTGTCACAAAGAAACAGGAAAGATAGAATGGAGAGAAGGAGAATTAAggagcagacagagagaaataagAAATAGGTTTAAAGAAGACAGTGGACAGACGGGGGATGCTACTACAACTAGCAGTGGCTGATCTCTCAGTTATTGGCGTCTCCTCCTTCGCTGTCCTGCTGGTCGCTGGTCCACAGGGTGAGGTTGTCCCGGAGGAGCTGCATGATGAGCGTGGAGTCCTTATAGGAGTCCTCGTTCAGATTGTCCAGGTGGCCGATGGCGTCATCAAAGGCTTCCTTGGCAAGCTGGCAAGCCTGCTCGGGCGCATTTTGAATCTCGTAGTAGAAGACGGAAAAGTTGAGCGCCAGGCCCAGGCGGATGGGATGGGTGGCCGGCATGCCCTTGCTAATATCGAAAGCCTCTTTGTAGGCGCCTTCAGATGATTCGACTGCAGAGGCCCTCTTTTCGCCAGTGGCCACCTCGGCGAGGTAACGGTAGTAGTCACCCTTCATCTTCAGGTAGAAGACCTTGCTCTCCACCTGGGTTTCGTCACAGTTTTTTATGAGGTACTGGTCGAGCAGGGTAAGAACGTCTTGGCACACCGACTCAAGCTCCTTCTCGATGGTCTCTCGATAGACACGCACCAGTTCCAACTTCTTCTCGTTGCCATCTGCCGCTGTCTTCTGCTCTATGCTGGAAACAACACGCCAAGATGACCGCCGGGCCCCAACAACATTCTTATAAGCCACAGAGAGCAGGTTGCGGTCTTCGTTGGATAATGGTTCATTCAGCTCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251886.1 lncRNA upstream 5032 5238279 ~ 5239558 (+) False LOC122352567
XR_006251887.1 lncRNA upstream 5032 5238279 ~ 5239558 (+) False LOC122352567
TU110922 lncRNA upstream 8635 5235599 ~ 5235955 (+) True G74958
TU110852 lncRNA upstream 126941 5116866 ~ 5117649 (+) False LOC122352404
TU110863 lncRNA upstream 136476 5107785 ~ 5108114 (+) True G74914
TU110997 lncRNA downstream 133002 5383139 ~ 5385855 (+) True G74992
TU111012 lncRNA downstream 206234 5456371 ~ 5458861 (+) True G75007
TU111104 lncRNA downstream 313566 5563703 ~ 5606701 (+) False G75067
TU111105 lncRNA downstream 313566 5563703 ~ 5638236 (+) True G75067
TU111114 lncRNA downstream 392752 5642889 ~ 5643101 (+) True G75076
XM_043249821.1 mRNA upstream 121217 5117849 ~ 5123373 (+) True LOC122352404
XM_043250823.1 mRNA upstream 177053 5058497 ~ 5067537 (+) False LOC122352997
XM_043250822.1 mRNA upstream 177053 5059768 ~ 5067537 (+) True LOC122352997
XM_043250595.1 mRNA upstream 195441 5046251 ~ 5049149 (+) True si:dkey-210j14.3
XM_043250592.1 mRNA upstream 199052 5038850 ~ 5045538 (+) True LOC122352867
XM_043251132.1 mRNA downstream 82873 5333010 ~ 5357455 (+) True sppl3
XM_043250805.1 mRNA downstream 161546 5411683 ~ 5446436 (+) True kcnn2
XM_043250803.1 mRNA downstream 161547 5411684 ~ 5446436 (+) False kcnn2
XM_043250804.1 mRNA downstream 161547 5411684 ~ 5444613 (+) False kcnn2
XM_043251123.1 mRNA downstream 197194 5447331 ~ 5451955 (+) True drg1
TU110913 other upstream 121318 5121489 ~ 5123272 (+) False LOC122352404
TU110851 other upstream 123936 5117851 ~ 5120654 (+) False LOC122352404
TU110461 other upstream 744490 4496574 ~ 4500100 (+) False LOC122352783
TU110470 other upstream 1124143 4075338 ~ 4120447 (+) False LOC122352388
TU110458 other upstream 1197636 4043587 ~ 4046954 (+) False LOC122352388
TU110943 other downstream 6701 5256838 ~ 5258823 (+) True G74965
TU111017 other downstream 248544 5498681 ~ 5500304 (+) False ccl19b
TU111087 other downstream 310514 5560651 ~ 5562085 (+) True G75062
XR_006251967.1 other downstream 811054 6061191 ~ 6089587 (+) True lrrtm4l1
TU111380 other downstream 1204199 6454336 ~ 6472107 (+) False LOC122352486

Expression Profile