RNA id: XR_006251887.1


Basic Information

Item Value
RNA id XR_006251887.1
length 1021
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC122352567
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5238279 ~ 5250137 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTAACCTTATTTGTTCATTGGCGTGTGATTGTCACCCACAATAGCCAATGAGATTGTGCCTTTACAGTATTTAAGGCTGGAGTCATGTCACCTGGTGTGCGTCACCGCTGGGACTGCTTTTGATGGAGTGCGCATGTGCAGAGGGTGCGTGGTCTCTGTGTTGTGGATCCTTTCGTGTCTGTCTTTCCTGCATAATCTTTTGTGAGTTGTGAGCAGCGGTAAAACTTGTGCTTATAATAATCCGCTTTTTGtgcGTTGACGTCTTTCCGATGCCGCGCGTCTAGTTACGAGAATGCGGAAGTGTTTACACGGCGTTTAAAAGGACGgcgctgctgtttttctcctttttctttggGACTTtcttttcgttttatttttattttcctttttgtggTATGCCCACtgttatgttattaattttgtttgcatCTGTTTATCGTCATCATTTAAAACTGATCAAGACGGGGTTGGTTGCACCGGTGACTTTTATCGGTGCTGTGAAAAGTGTCCTGATGCAACTTTGACTTTTTGATAACCTGATTGCTGACCCTATCGCTCCAGTGAGCATTTGAACTGTTCCATCCAGTATTTGGGTCCCTTTTTTTTGCTCTGAATATTTTTGTAGGTTTAATTTGATGGAAATAACTTGACTGTATTACCGaatgtaatattacttttctcttgttttggctTGCTCTAGGCATTGTCGGTCCCTGAGGCTAGTTAGCTTCGAGTATTGGTGGTGGTATAATCGCGTGGAGTGCAGTGCTGCTTGGATTCACCtttcacagagtgtgtgtgtgggatgcaCGAGTGTGCCATTAGGATCCTCACTTCGCCTAGCCTGCCCTTGCCGTTGGAAAGCCTgtgctgtatctttttttttttttttttcttgtttctttgagtattctaaatgtcttttatttgtaGGAAACAGAGCTCCCTTTTTGTAACCATGTGATATTGAATTGATACTGATTGATCTTGagacttttaactatttattgtgGATATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110922 lncRNA upstream 2324 5235599 ~ 5235955 (+) True G74958
TU110852 lncRNA upstream 120630 5116866 ~ 5117649 (+) False LOC122352404
TU110863 lncRNA upstream 130165 5107785 ~ 5108114 (+) True G74914
TU110857 lncRNA upstream 139715 5097644 ~ 5098564 (+) True G74908
TU110855 lncRNA upstream 150688 5087280 ~ 5087591 (+) True G74906
TU110997 lncRNA downstream 143581 5383139 ~ 5385855 (+) True G74992
TU111012 lncRNA downstream 216813 5456371 ~ 5458861 (+) True G75007
TU111104 lncRNA downstream 324145 5563703 ~ 5606701 (+) False G75067
TU111105 lncRNA downstream 324145 5563703 ~ 5638236 (+) True G75067
TU111114 lncRNA downstream 403331 5642889 ~ 5643101 (+) True G75076
XM_043249821.1 mRNA upstream 114906 5117849 ~ 5123373 (+) True LOC122352404
XM_043250823.1 mRNA upstream 170742 5058497 ~ 5067537 (+) False LOC122352997
XM_043250822.1 mRNA upstream 170742 5059768 ~ 5067537 (+) True LOC122352997
XM_043250595.1 mRNA upstream 189130 5046251 ~ 5049149 (+) True si:dkey-210j14.3
XM_043250592.1 mRNA upstream 192741 5038850 ~ 5045538 (+) True LOC122352867
XM_043251132.1 mRNA downstream 93452 5333010 ~ 5357455 (+) True sppl3
XM_043250805.1 mRNA downstream 172125 5411683 ~ 5446436 (+) True kcnn2
XM_043250803.1 mRNA downstream 172126 5411684 ~ 5446436 (+) False kcnn2
XM_043250804.1 mRNA downstream 172126 5411684 ~ 5444613 (+) False kcnn2
XM_043251123.1 mRNA downstream 207773 5447331 ~ 5451955 (+) True drg1
TU110913 other upstream 115007 5121489 ~ 5123272 (+) False LOC122352404
TU110851 other upstream 117625 5117851 ~ 5120654 (+) False LOC122352404
TU110461 other upstream 738179 4496574 ~ 4500100 (+) False LOC122352783
TU110470 other upstream 1117832 4075338 ~ 4120447 (+) False LOC122352388
TU110458 other upstream 1191325 4043587 ~ 4046954 (+) False LOC122352388
TU110925 other downstream 5032 5244590 ~ 5250137 (+) True LOC122352567
TU110943 other downstream 17280 5256838 ~ 5258823 (+) True G74965
TU111017 other downstream 259123 5498681 ~ 5500304 (+) False ccl19b
TU111087 other downstream 321093 5560651 ~ 5562085 (+) True G75062
XR_006251967.1 other downstream 821633 6061191 ~ 6089587 (+) True lrrtm4l1

Expression Profile