RNA id: TU110997


Basic Information

Item Value
RNA id TU110997
length 788
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G74992
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5383139 ~ 5385855 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATTTCATTAGCGCTGCCTTCCTCCCTTCATTCACATTCACGAGGAGAGAGAATGTCCCTTACACCGGGGCAAGTTGTCCCTACGACTATGGATGAGTCTTCTAATTTTtataagttttattattattattattattagctattatttttacattatttttttatttctatcattttatatatataacccacaaaatgaaacatttagcagtgacattttagtattatattattatttatttatgaatattttgaatcagattcttttatattttcaattttcattttatgaattacatttttacgagGCACGTGGAACCACACGAAAACACCAGAGAAGAAGCAGAACGCAAAAAATATGAGGAAGCAGAAATAATCCAAATGCTCCTGCAATGGAAAATACATTAGAAAGGACTAAGTAACTGAATCAGCAAGAAGACAAGGCATGAAGGCATAAAATGACAAAGGCTCACCACTATGAGAGGAAACACCATGCCCACGAGGAAGAGTCCTGTCCAGTTGAGGACGCAGGCTACCATGAACGCCGGAGGTTTGTAGGACTGTGTGAAAATCTCACCAGGAAGTGGTGCTGTCACCCCAGCTGTGGAAGAGAGAATTCACAAGAAGAGTGTTGTTAAGACAACAAGGCTACGGATAAGCATCTGAACACCTGACTACAGGATAAAAATACGTGGATATACCTGGCCCGCTAGAGAAGAAGATGATGTAGATGAAAATAAGGACCATGCTGCAGTATGGCATCCAGGATACAAATTTCTATGACAGCC

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function
GO:0035379 carbon dioxide transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251886.1 lncRNA upstream 143581 5238279 ~ 5239558 (+) False LOC122352567
XR_006251887.1 lncRNA upstream 143581 5238279 ~ 5239558 (+) False LOC122352567
TU110922 lncRNA upstream 147184 5235599 ~ 5235955 (+) True G74958
TU110852 lncRNA upstream 265490 5116866 ~ 5117649 (+) False LOC122352404
TU110863 lncRNA upstream 275025 5107785 ~ 5108114 (+) True G74914
TU111012 lncRNA downstream 70516 5456371 ~ 5458861 (+) True G75007
TU111104 lncRNA downstream 177848 5563703 ~ 5606701 (+) False G75067
TU111105 lncRNA downstream 177848 5563703 ~ 5638236 (+) True G75067
TU111114 lncRNA downstream 257034 5642889 ~ 5643101 (+) True G75076
TU111115 lncRNA downstream 257694 5643549 ~ 5643766 (+) True G75077
XM_043251132.1 mRNA upstream 25684 5333010 ~ 5357455 (+) True sppl3
XM_043249821.1 mRNA upstream 259766 5117849 ~ 5123373 (+) True LOC122352404
XM_043250823.1 mRNA upstream 315602 5058497 ~ 5067537 (+) False LOC122352997
XM_043250822.1 mRNA upstream 315602 5059768 ~ 5067537 (+) True LOC122352997
XM_043250595.1 mRNA upstream 333990 5046251 ~ 5049149 (+) True si:dkey-210j14.3
XM_043250805.1 mRNA downstream 25828 5411683 ~ 5446436 (+) True kcnn2
XM_043250803.1 mRNA downstream 25829 5411684 ~ 5446436 (+) False kcnn2
XM_043250804.1 mRNA downstream 25829 5411684 ~ 5444613 (+) False kcnn2
XM_043251123.1 mRNA downstream 61476 5447331 ~ 5451955 (+) True drg1
XM_043249966.1 mRNA downstream 79102 5464957 ~ 5477005 (+) True slc20a1b
TU110943 other upstream 124316 5256838 ~ 5258823 (+) True G74965
TU110926 other upstream 133002 5238428 ~ 5250137 (+) False LOC122352567
TU110925 other upstream 133002 5244590 ~ 5250137 (+) True LOC122352567
TU110913 other upstream 259867 5121489 ~ 5123272 (+) False LOC122352404
TU110851 other upstream 262485 5117851 ~ 5120654 (+) False LOC122352404
TU111017 other downstream 112826 5498681 ~ 5500304 (+) False ccl19b
TU111087 other downstream 174796 5560651 ~ 5562085 (+) True G75062
XR_006251967.1 other downstream 675336 6061191 ~ 6089587 (+) True lrrtm4l1
TU111380 other downstream 1068481 6454336 ~ 6472107 (+) False LOC122352486
TU111650 other downstream 1756438 7142293 ~ 7150581 (+) True G75422

Expression Profile