RNA id: TU111012


Basic Information

Item Value
RNA id TU111012
length 2296
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G75007
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5456371 ~ 5458861 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGACTTATTCTGTTGTTGTATATGGTgattaaaagctattaaaacaCAAGATTTACTATACTGTTTTTGAAGGTCACAGTCTtcattaataatgaaacaagACTCAGAAATTAATTCAGATTGTTTCATTGTCACCAATAAATGAATTAGatggtttattttcacattagaGCAAAAAACAAACTCTCATGCTTCAGGCGTCTCCATCATTCATACATCTACTATTTCACTTGAGATTACAGTAGAACACTTCTAgtttagatattagaaaaaaaaaaaaagtgaaaattctatCAAGCGCATTAAACTGCGGTTGGGTTTTATCATGATGCTTTAACTCGAAACATAAGCAGAGTATTGTCAAACACCaagaaaatgcacttttttttagtaTACTAGTGAATATCTGAGATTTCAATGTGATGTTTAAACGAAATGACAGAAAACAATGAATGTGCTTAACAACCATATTAATGATGGGTGGACAGTAATTTAAATCTACTAGGAATAAATTAACTTATTTTTGGGAAATGGAAAAAGATATGACACTTGGATATTTGTATGCATTAAGGAGCAAAATGAGTGTAGTTATGCTCTATTAGCAAATTACATAATTTCAACCCACACCTTTTTTTCCCAAACTGAGGTCCAAATCAAAACTACCTGTGGTCATTGACAACATGCCACAAATGTTGTCAATAGAGCATAACCTCTATAAAGGTGGACTATTCCTTAATAACAATACCCTTTGACTGATcactttaaacaatattttaaacatgaaacaaaatcatATTGCCATAGCTTTAAAAATGAGATGTAAACAATGCAGTGCTATCTAGGGGTTTAACATGCACAAATGTATTTAGGCCACATGTTTTTGTGAACTAACAAAATGGTGTGAcaaatactaaattaataaagGACAAACACTTAACACAAAAGGGCAAATTAACAATTTCTTGTGGAACAAAAGCAAATAGGACATTGATGTTTACTTACACTTTCAATAGAGAGCAGATATTCAAAACAGAAACTCACATGGTTGATTATATGGACGTCATAATCAACTAACTCGGACCATTCACGTTTTAAGTGcaacaattttaaattatgccTGTTTAGTTACCAATCatgtaacaaaaatgtcatGACATTATCGCTTCATTCAAACAGAGGACATCTGGATATCATAAACGAGTATAGATTTGCACACATCCACCAAATAAAGCCTGACTTTGAGATTTGGAAgatccattttcattttaaatgtttctctgCAAAGACCATAAGCCAGAAATGTACCTTGTACATGTACCTTAGATGATTTACATACTTTTTCCCACTGACATGTTACTGTATGTATAATTTCACTGATGTTATGACACGAGTATGAAATGAAGGTCAAACGATGGAATGGAGACCCAACAGGACAAGAATTTTTGTTTATGTCTGCAAGTTGTATAAAGTCGATGTAATCTGCATCAACAAGCCAGGTGTGACTGTAccaattttttctttgttgcagtataaacatatataacacACAATCCCATCAGAGTGGATTCCCAATCACAAAACAcacccacttttttttttgcacttgcaCAAAATCCATCCTGCGACGAGTTTGTAGGCCGACTTACGCACCGTCTTCCAATGTCATTACAACATCGAATCACAGTGTCCTCACTTGTTAAGAGTTCAGAGTAGAAAAGATGTTTTAGACTTCAAACAGCCCTCTTGAGCGCATGAGGAAGCAGAGCCTGATCGTGAGGATGCTGCGGTTGGCATAAGACACAGTCTTGgttttcctgttgttttctcAGCATCTCAACATGATCGAATCTGATGATCATGATGTAAATGCGGAGTGAAAACTGCTTTGGCAGGAGAATCTACAATTAACAAATGGCATTATTTTGGCTCACCTCAACAGATGTACCCTTACAGAAAGAGGAAGCAAACTAAATCGGGGATGAGTGTGCTCAGTATGTGTTTGTACAAGACTGGTCAATGGCCTAGATCACTTCGGGAACAGATGGTTCTTTGTGGCTTCAATTAATGACctttgtagcaaaaaaaaaattgggtcATTTTTACCATAGTATATCAAACGCTGCGCCCAGTCGCTCAGGCGTAGATCTGACTCGGGCCTCCGGTGTGAGCGTTGTCAGCTAGTCGTTCTTGGGTAGGTTGGATAGGTTTTACGAAGCTGACGTAGTCGTGGACACCGACATCCATGTTTTTAGCTCTGAGAGCTGCGGTGTGAAGCTTCTCCAGGAAGTCTGGCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110997 lncRNA upstream 70516 5383139 ~ 5385855 (+) True G74992
XR_006251886.1 lncRNA upstream 216813 5238279 ~ 5239558 (+) False LOC122352567
XR_006251887.1 lncRNA upstream 216813 5238279 ~ 5239558 (+) False LOC122352567
TU110922 lncRNA upstream 220416 5235599 ~ 5235955 (+) True G74958
TU110852 lncRNA upstream 338722 5116866 ~ 5117649 (+) False LOC122352404
TU111104 lncRNA downstream 104842 5563703 ~ 5606701 (+) False G75067
TU111105 lncRNA downstream 104842 5563703 ~ 5638236 (+) True G75067
TU111114 lncRNA downstream 184028 5642889 ~ 5643101 (+) True G75076
TU111115 lncRNA downstream 184688 5643549 ~ 5643766 (+) True G75077
TU111119 lncRNA downstream 198498 5657359 ~ 5663075 (+) True G75081
XM_043251123.1 mRNA upstream 4416 5447331 ~ 5451955 (+) True drg1
XM_043250805.1 mRNA upstream 9935 5411683 ~ 5446436 (+) True kcnn2
XM_043250803.1 mRNA upstream 9935 5411684 ~ 5446436 (+) False kcnn2
XM_043250804.1 mRNA upstream 11758 5411684 ~ 5444613 (+) False kcnn2
XM_043251132.1 mRNA upstream 98916 5333010 ~ 5357455 (+) True sppl3
XM_043249966.1 mRNA downstream 6096 5464957 ~ 5477005 (+) True slc20a1b
XM_043249967.1 mRNA downstream 6096 5464957 ~ 5477005 (+) False slc20a1b
XM_043250909.1 mRNA downstream 23904 5482765 ~ 5491729 (+) True pigo
XM_043250000.1 mRNA downstream 39786 5498647 ~ 5500388 (+) True ccl19b
XM_043251118.1 mRNA downstream 60307 5519168 ~ 5545588 (+) False phf24
TU110943 other upstream 197548 5256838 ~ 5258823 (+) True G74965
TU110926 other upstream 206234 5238428 ~ 5250137 (+) False LOC122352567
TU110925 other upstream 206234 5244590 ~ 5250137 (+) True LOC122352567
TU110913 other upstream 333099 5121489 ~ 5123272 (+) False LOC122352404
TU110851 other upstream 335717 5117851 ~ 5120654 (+) False LOC122352404
TU111017 other downstream 39820 5498681 ~ 5500304 (+) False ccl19b
TU111087 other downstream 101790 5560651 ~ 5562085 (+) True G75062
XR_006251967.1 other downstream 602330 6061191 ~ 6089587 (+) True lrrtm4l1
TU111380 other downstream 995475 6454336 ~ 6472107 (+) False LOC122352486
TU111650 other downstream 1683432 7142293 ~ 7150581 (+) True G75422

Expression Profile