RNA id: TU111017


Basic Information

Item Value
RNA id TU111017
length 712
RNA type TUCP
GC content 0.46
exon number 4
gene id ccl19b
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5498647 ~ 5500388 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCAAATATCTGCTGAGCACAGGTGAACGAACACACACGGAAGGACAAAATGATGTTCTCTAACAGACTTCTCTTATGGACAGGTGCTCTGCTCATATTGAGCGTCAGTCTATGGAGCTGCACTACAGCTCAGAACGATGGTGCAGCGGATTGTTGTTTAACCACCAGTGACCGGCGAATCCCGAAGAAGGTGGTGACGTCCTTCATCGTTCAGACCGGCGATGGAGCCTGCAGAATTCCTGCCACTATATTTGTCACAAAGAAGGGCTTGAAGCTCTGTGCACCGTTTCCGAGTGAGAGTAACTGGGTGAGCAAACTGATCGACTATATACTAGCAGGACCTGTATCCAAACCTAGAGGAAAGAAGCATAGACAACAGTAAATGCCACCATGGCAGATCGTGCAGGTCCTGCCTGCTCTCACTTTACACGCGTGAACGGGACTGGTCCTGGAACAGATACAACCTGATATTACTTACCCTTAATAGTAAACGCTCATTCTCAGGTTTGCTACGTGAGCACTCTAGTGGAGCAGGTCAAGTGTGAATCGTACCGTCGTAACAATAAGCTTTACAAGATATGAACCGTTTTTGAAATGTGAACCCTTCCCCAACTGCACTACATGAAGAGATTTTAAGCTAACTAGTTTCTCGTTTCCATCACTTGTTGCTGAGTTTGTATTCTGTCTGCTTTTGCAAAATGAACGTGTCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111012 lncRNA upstream 39820 5456371 ~ 5458861 (+) True G75007
TU110997 lncRNA upstream 112826 5383139 ~ 5385855 (+) True G74992
XR_006251886.1 lncRNA upstream 259123 5238279 ~ 5239558 (+) False LOC122352567
XR_006251887.1 lncRNA upstream 259123 5238279 ~ 5239558 (+) False LOC122352567
TU110922 lncRNA upstream 262726 5235599 ~ 5235955 (+) True G74958
TU111104 lncRNA downstream 63399 5563703 ~ 5606701 (+) False G75067
TU111105 lncRNA downstream 63399 5563703 ~ 5638236 (+) True G75067
TU111114 lncRNA downstream 142585 5642889 ~ 5643101 (+) True G75076
TU111115 lncRNA downstream 143245 5643549 ~ 5643766 (+) True G75077
TU111119 lncRNA downstream 157055 5657359 ~ 5663075 (+) True G75081
XM_043250909.1 mRNA upstream 6952 5482765 ~ 5491729 (+) True pigo
XM_043249966.1 mRNA upstream 21676 5464957 ~ 5477005 (+) True slc20a1b
XM_043249967.1 mRNA upstream 21676 5464957 ~ 5477005 (+) False slc20a1b
XM_043251123.1 mRNA upstream 46726 5447331 ~ 5451955 (+) True drg1
XM_043250805.1 mRNA upstream 52245 5411683 ~ 5446436 (+) True kcnn2
XM_043251118.1 mRNA downstream 18864 5519168 ~ 5545588 (+) False phf24
XM_043251116.1 mRNA downstream 18867 5519171 ~ 5545588 (+) True phf24
XM_043251117.1 mRNA downstream 18870 5519174 ~ 5545588 (+) False phf24
XM_043251088.1 mRNA downstream 48401 5548705 ~ 5553640 (+) False prkab1a
XM_043251089.1 mRNA downstream 48413 5548717 ~ 5553640 (+) False prkab1a
TU110943 other upstream 239858 5256838 ~ 5258823 (+) True G74965
TU110926 other upstream 248544 5238428 ~ 5250137 (+) False LOC122352567
TU110925 other upstream 248544 5244590 ~ 5250137 (+) True LOC122352567
TU110913 other upstream 375409 5121489 ~ 5123272 (+) False LOC122352404
TU110851 other upstream 378027 5117851 ~ 5120654 (+) False LOC122352404
TU111087 other downstream 60347 5560651 ~ 5562085 (+) True G75062
XR_006251967.1 other downstream 560887 6061191 ~ 6089587 (+) True lrrtm4l1
TU111380 other downstream 954032 6454336 ~ 6472107 (+) False LOC122352486
TU111650 other downstream 1641989 7142293 ~ 7150581 (+) True G75422
TU111651 other downstream 1653282 7153586 ~ 7161263 (+) False LOC122352414

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003950 True 743 mRNA 0.41 4 NC_007121.7 17776981 ~ 17780102 (+)
grasscarp (Ctenopharyngodon idella) TU483945 True 681 TUCP 0.42 4 CI01000304 7352649 ~ 7354332 (+)