RNA id: XM_043250000.1



Basic Information


Item Value
RNA id XM_043250000.1
length 830
RNA type mRNA
GC content 0.44
exon number 4
gene id ccl19b
representative True

Chromosome Information


Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5498647 ~ 5500388 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AGCAGCGTATAAAAGGCGTGCAAGCAGCGGTGAGGCAAATATCTGCTGAGCACAGGTGAACGAACACACACGGAAGGACAAAATGATGTTCTCTAACAGACTTCTCTTATGGACAGGTGCTCTGCTCATATTGAGCGTCAGTCTATGGAGCTGCACTACAGCTCAGAACGATGGTGCAGCGGATTGTTGTTTAACCACCAGTGACCGGCGAATCCCGAAGAAGGTGGTGACGTCCTTCATCGTTCAGACCGGCGATGGAGCCTGCAGAATTCCTGCCACTATATTTGTCACAAAGAAGGGCTTGAAGCTCTGTGCACCGTTTCCGAGTGAGAGTAACTGGGTGAGCAAACTGATCGACTATATACTAGCAGGACCTGTATCCAAACCTAGAGGAAAGAAGCATAGACAACAGTAAATGCCACCATGGCAGATCGTGCAGGTCCTGCCTGCTCTCACTTTACACGCGTGAACGGGACTGGTCCTGGAACAGATACAACCTGATATTACTTACCCTTAATAGTAAACGCTCATTCTCAGGTTTGCTACGTGAGCACTCTAGTGGAGCAGGTCAAGTGTGAATCGTACCGTCGTAACAATAAGCTTTACAAGATATGAACCGTTTTTGAAATGTGAACCCTTCCCCAACTGCACTACATGAAGAGATTTTAAGCTAACTAGTTTCTCGTTTCCATCACTTGTTGCTGAGTTTGTATTCTGTCTGCTTTTGCAAAATGAACGTGTCTCCTGagccactgaaaaaaaagttagttttctatttttttactttgtattttagaatataaataaaagcttttacgTTTGAAATATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111012 lncRNA upstream 39786 5456371 ~ 5458861 (+) True G75007
TU110997 lncRNA upstream 112792 5383139 ~ 5385855 (+) True G74992
XR_006251886.1 lncRNA upstream 259089 5238279 ~ 5239558 (+) False LOC122352567
XR_006251887.1 lncRNA upstream 259089 5238279 ~ 5239558 (+) False LOC122352567
TU110922 lncRNA upstream 262692 5235599 ~ 5235955 (+) True G74958
TU111104 lncRNA downstream 63315 5563703 ~ 5606701 (+) False G75067
TU111105 lncRNA downstream 63315 5563703 ~ 5638236 (+) True G75067
TU111114 lncRNA downstream 142501 5642889 ~ 5643101 (+) True G75076
TU111115 lncRNA downstream 143161 5643549 ~ 5643766 (+) True G75077
TU111119 lncRNA downstream 156971 5657359 ~ 5663075 (+) True G75081
XM_043250909.1 mRNA upstream 6918 5482765 ~ 5491729 (+) True pigo
XM_043249966.1 mRNA upstream 21642 5464957 ~ 5477005 (+) True slc20a1b
XM_043249967.1 mRNA upstream 21642 5464957 ~ 5477005 (+) False slc20a1b
XM_043251123.1 mRNA upstream 46692 5447331 ~ 5451955 (+) True drg1
XM_043250803.1 mRNA upstream 52211 5411684 ~ 5446436 (+) False kcnn2
XM_043251118.1 mRNA downstream 18780 5519168 ~ 5545588 (+) False phf24
XM_043251116.1 mRNA downstream 18783 5519171 ~ 5545588 (+) True phf24
XM_043251117.1 mRNA downstream 18786 5519174 ~ 5545588 (+) False phf24
XM_043251088.1 mRNA downstream 48317 5548705 ~ 5553640 (+) False prkab1a
XM_043251089.1 mRNA downstream 48329 5548717 ~ 5553640 (+) False prkab1a
TU110943 other upstream 239824 5256838 ~ 5258823 (+) True G74965
TU110926 other upstream 248510 5238428 ~ 5250137 (+) False LOC122352567
TU110925 other upstream 248510 5244590 ~ 5250137 (+) True LOC122352567
TU110913 other upstream 375375 5121489 ~ 5123272 (+) False LOC122352404
TU110851 other upstream 377993 5117851 ~ 5120654 (+) False LOC122352404
TU111087 other downstream 60263 5560651 ~ 5562085 (+) True G75062
XR_006251967.1 other downstream 560803 6061191 ~ 6089587 (+) True lrrtm4l1
TU111380 other downstream 953948 6454336 ~ 6472107 (+) False LOC122352486
TU111650 other downstream 1641905 7142293 ~ 7150581 (+) True G75422
TU111651 other downstream 1653198 7153586 ~ 7161263 (+) False LOC122352414

Expression Profile