RNA id: TU111028


Basic Information

Item Value
RNA id TU111028
length 602
lncRNA type read_through
GC content 0.35
exon number 2
gene id G75019
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5381576 ~ 5451970 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAGACATCCAAAGATTTGCATATAAGGTTTTTATTGAAGTTCACTTTGTTTTGCAGACCATAGATGCATTTAATCTATAACTGCATTCAAGCCATTGTGATGCCGATCTGAGCACAAGAAGACATTATTTAATATGCCGAATGAATCTGTGTGATTTACAATCATACtttgtccaaaaataaaaacaaagaaacgacAATGGTGCCATGGGAACCTTCAGGGCATTTAGAAATGTCCCATCACTTCTTATGTGAAGTGTGATGATCATGCACACATCAGAGTTCTTTTATTTCTTGACCAGCTGGATTACATCCTCGTCTTCTAGGACATGGTCTTTGCCGACTTTCTGCGGGTTATGCTTCACTGACGACCCCCACACTAATGCACTgcagagagaagagaaagatggAGCGAGACACGTTTCGACAGGAGTACTGTACTAAAGATTTTACACACATTGCTTAAAATGTCTGTTTACtaggtaatttatttttaaatctgcacCAAATTTGAGACATGAAATAAAGACTTTGAAATCAAACTATTACCATAAAACacacacacacatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110923 lncRNA downstream 145627 5235606 ~ 5235949 (-) True G74959
TU110921 lncRNA downstream 242117 5137567 ~ 5139459 (-) True G74957
TU110919 lncRNA downstream 244400 5136158 ~ 5137176 (-) True G74955
TU110878 lncRNA downstream 280157 5097644 ~ 5101419 (-) True G74923
TU110907 lncRNA downstream 285548 5095628 ~ 5096028 (-) True G74944
TU111074 lncRNA upstream 46513 5498483 ~ 5500310 (-) True G75049
TU111102 lncRNA upstream 106972 5558942 ~ 5559159 (-) True G75065
XR_006251947.1 lncRNA upstream 426749 5878719 ~ 5890613 (-) True LOC122353023
TU111192 lncRNA upstream 437004 5888974 ~ 5889561 (-) False LOC122353023
TU111182 lncRNA upstream 452410 5904380 ~ 5906868 (-) True G75134
XM_043250485.1 mRNA downstream 56826 5284087 ~ 5324750 (-) True gnaz
XM_043250486.1 mRNA downstream 78468 5284087 ~ 5303108 (-) False gnaz
XM_043250083.1 mRNA downstream 102378 5274471 ~ 5279198 (-) True rab36
XM_043250012.1 mRNA downstream 107422 5253037 ~ 5274154 (-) False depdc5
XM_043250011.1 mRNA downstream 107422 5253037 ~ 5274154 (-) False depdc5
XM_043250446.1 mRNA upstream 4524 5456494 ~ 5463269 (-) False stard7
XM_043250445.1 mRNA upstream 4524 5456494 ~ 5463269 (-) True stard7
XM_043249971.1 mRNA upstream 25613 5477583 ~ 5480761 (-) False si:dkey-200l5.4
XM_043249969.1 mRNA upstream 25613 5477583 ~ 5480761 (-) False si:dkey-200l5.4
XM_043249970.1 mRNA upstream 25613 5477583 ~ 5480761 (-) False si:dkey-200l5.4
XR_006251921.1 other downstream 1468834 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 1468834 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 1773788 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 2041647 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 3184265 2194115 ~ 2197311 (-) False LOC122352692
TU111527 other upstream 1086564 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 1176455 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 1176460 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 1725354 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 1725781 7177751 ~ 7180821 (-) True G75454

Expression Profile