RNA id: TU111074


Basic Information

Item Value
RNA id TU111074
length 1729
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G75049
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5498483 ~ 5500310 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tggctCAGGAGACACGTTCATTTTGCAAAAGCAGACAGAATACAAACTCAGCAACAAGTGATGGAAACGAGAAACTAGTTAGCTTAAAATCTCTTCATGTAGTGCAGTTGGGGAAGGGTTCACATTTCAAAAACGGTTCATATCTTGTAAAGCTTATTGTTACGACGGTACGATTCACACTTGACCTGCTCCACTAGAGTGCTCACGTAGCAAACCTGAGAATGAGCGTTTACTATTAAGGGTAAGTAATATCAGGTTGTATCTGTTCCAGGACCAGTCCCGTTCACGCGTGTAAAGTGAGAGCAGGCAGGACCTGCACGATCTGCCATGGTGGCATTTACTGTTGTCTATGCTTCTTTCCTGTAGGAAAAAGAATGCCATGTTATAAATGTAGTTTCGCGTTATTTTTGGTTGATGTTATTTTACGcgatttgttgttttatgtcaTGTTTCGAATGTTACGCTGTGTTCTAAACGTCTTCTAAacgttattttattataagtgtcacaaatgttacattatgtgtttatgtaatgTTGTGTTATGCAGTCTTGTAACGTTATGCTGATACCTAAATATTATATCATGTTGTTATGTTgtgttatatgttatgttataaatgctatttttaaattgcgtgttgtaaatgttatgttcaatttttttatactgtgtTTTAAGTGTGAAAGTAAGTTgttctaaatgttattttactttacgTTACGTTGCTCtaatttttgtgttgttgattattttctaaacattagaatattttctaaacatttgtTCTGCTATATTATAATGTTGCTGCATTATCTTTTCTAAATATTACGGCGTAAATGTCATGCTATGTTTGAAGTTTTGCTAGATGCTGTATTCTAAATATTACCTTATGTTATGCATTAGAatgcatgtgcatttttatatttttgaagtgCTAATACTTGCAGAAATACTTCCAAACACTTACCTCTAGGTTTGGATACAGGTCCTGCTAGTATATAGTCGATCAGTTTGCTCACCCAGTTACTCTCACTCGGAAACGGTGCACAGAGCTTCAAGCCCTTCTTTGTGACAAAATAGTGGCAGGAATTCTGCAGGCTCCATCGCCGGTCTGAACGATGAAGGACGTCACCACCTTCTTCGGGATTCGCCGGTCACTGGTGGTTAAACAACAATCCGCTGCACCATCGTTCTGAGCTGTAAAAGTTAAACATTGCACAGGATGTTAACCATTAGCAACAtctcacctaaaaaaaaattaggaacaaaaaaagagatcatATTTACAGAAAgcaaagtaaaagtaaagtgtatgcattttgtaaaaaaaatccaaatccaTGTTAATACAGATTTGTTTAAACCTCTTGGCAGAAAGATATAGCTAAATGTACACTCACCTGTAGTGCAGCTCCATAGACTGACGCTCAATATGAGCAGAGCACCTGTCCATAAGAGAAGTCTGTTAGAGAACATCATTTTGTCCTTCCGTGTGTGTTCGTTCACCTGTGCTCAGCAGATATTTGCCTCACCGCTGCTTGCACGCCTTTTATACGCTGCTGCAAAAACTTTCGCTTTCTTTATGCTTTACGGCAACCGTTTCCTGGAAATCCATCCCTATTAAAGGAGACCTTTCACCTTCTTTTGTTAACTGGAAATGGTGGCGCCTGCCAGGGGATCCTTCAGGTGAAGGGGAGGGAAGGTTTCGacatttcttctgttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111028 lncRNA downstream 46513 5381576 ~ 5451970 (-) True G75019
TU110923 lncRNA downstream 262534 5235606 ~ 5235949 (-) True G74959
TU110921 lncRNA downstream 359024 5137567 ~ 5139459 (-) True G74957
TU110919 lncRNA downstream 361307 5136158 ~ 5137176 (-) True G74955
TU110878 lncRNA downstream 397064 5097644 ~ 5101419 (-) True G74923
TU111102 lncRNA upstream 58632 5558942 ~ 5559159 (-) True G75065
XR_006251947.1 lncRNA upstream 378409 5878719 ~ 5890613 (-) True LOC122353023
TU111192 lncRNA upstream 388664 5888974 ~ 5889561 (-) False LOC122353023
TU111182 lncRNA upstream 404070 5904380 ~ 5906868 (-) True G75134
TU111188 lncRNA upstream 415748 5916058 ~ 6021964 (-) True G75138
XM_043249971.1 mRNA downstream 17722 5477583 ~ 5480761 (-) False si:dkey-200l5.4
XM_043249969.1 mRNA downstream 17722 5477583 ~ 5480761 (-) False si:dkey-200l5.4
XM_043249970.1 mRNA downstream 17722 5477583 ~ 5480761 (-) False si:dkey-200l5.4
XM_043249968.1 mRNA downstream 17722 5477583 ~ 5480761 (-) True si:dkey-200l5.4
XM_043250446.1 mRNA downstream 35214 5456494 ~ 5463269 (-) False stard7
XM_043249979.1 mRNA upstream 60615 5560925 ~ 5562612 (-) True ppp1r3c2a
XM_043249959.1 mRNA upstream 163148 5663458 ~ 5750466 (-) True LOC122352526
XM_043250955.1 mRNA upstream 445944 5946254 ~ 5952840 (-) True adra1ab
XM_043250529.1 mRNA upstream 597278 6097588 ~ 6132513 (-) True si:ch211-127i16.2
XM_043251106.1 mRNA upstream 703268 6203578 ~ 6248076 (-) True gfra2b
XR_006251921.1 other downstream 1585741 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 1585741 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 1890695 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 2158554 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 3301172 2194115 ~ 2197311 (-) False LOC122352692
TU111527 other upstream 1038224 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 1128115 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 1128120 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 1677014 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 1677441 7177751 ~ 7180821 (-) True G75454

Expression Profile