RNA id: TU111104


Basic Information

Item Value
RNA id TU111104
length 428
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G75067
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5563703 ~ 5638236 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cggctattctgcagatttttttccaccgctaggggcgctctaactggaattagaatcaaaactaagacaaaataaatgcaaagaagaatacgctagttcctctttagcagatataagtcggtagaagcggatagaaggacgacaaattaccaatcctgtcaaactctatcttttcaaatcctcaccccttcatcatggaacccacacgaagaagttcgtatgatgcaagttttaagttgaaggccaTCGATCTCGCGATACAAGAAGCTTAGCGTCAATGAGTCTATGGtgagacgctggaggaggcCGCGGGAAGAGCGTTTTAATCTGCAAAGTTGCTGCCGTGTTAAAATACAGCAGCATGCAGAGCTGTGGTCATCACGGAGGAGCGTATTGCTTTCGAGTTCATAAAGCAACAGAAAAGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111012 lncRNA upstream 104842 5456371 ~ 5458861 (+) True G75007
TU110997 lncRNA upstream 177848 5383139 ~ 5385855 (+) True G74992
XR_006251886.1 lncRNA upstream 324145 5238279 ~ 5239558 (+) False LOC122352567
XR_006251887.1 lncRNA upstream 324145 5238279 ~ 5239558 (+) False LOC122352567
TU110922 lncRNA upstream 327748 5235599 ~ 5235955 (+) True G74958
TU111114 lncRNA downstream 36188 5642889 ~ 5643101 (+) True G75076
TU111115 lncRNA downstream 36848 5643549 ~ 5643766 (+) True G75077
TU111119 lncRNA downstream 50658 5657359 ~ 5663075 (+) True G75081
TU111124 lncRNA downstream 56456 5663157 ~ 5722027 (+) True G75083
TU111138 lncRNA downstream 300478 5907179 ~ 5907527 (+) True G75097
XM_043251088.1 mRNA upstream 10063 5548705 ~ 5553640 (+) False prkab1a
XM_043251089.1 mRNA upstream 10063 5548717 ~ 5553640 (+) False prkab1a
XM_043251090.1 mRNA upstream 10063 5548719 ~ 5553640 (+) True prkab1a
XM_043251118.1 mRNA upstream 18115 5519168 ~ 5545588 (+) False phf24
XM_043251116.1 mRNA upstream 18115 5519171 ~ 5545588 (+) True phf24
XM_043250743.1 mRNA downstream 285902 5892603 ~ 5906876 (+) True ppp2r2ab
XM_043250302.1 mRNA downstream 301312 5908013 ~ 5918050 (+) True bnip3lb
XM_043250958.1 mRNA downstream 314458 5921159 ~ 5942002 (+) True dpysl2b
XM_043250959.1 mRNA downstream 314458 5921159 ~ 5942002 (+) False dpysl2b
XM_043250960.1 mRNA downstream 318137 5924838 ~ 5942002 (+) False dpysl2b
TU111087 other upstream 1618 5560651 ~ 5562085 (+) True G75062
TU111017 other upstream 63399 5498681 ~ 5500304 (+) False ccl19b
TU110943 other upstream 304880 5256838 ~ 5258823 (+) True G74965
TU110926 other upstream 313566 5238428 ~ 5250137 (+) False LOC122352567
TU110925 other upstream 313566 5244590 ~ 5250137 (+) True LOC122352567
XR_006251967.1 other downstream 454490 6061191 ~ 6089587 (+) True lrrtm4l1
TU111380 other downstream 847635 6454336 ~ 6472107 (+) False LOC122352486
TU111650 other downstream 1535592 7142293 ~ 7150581 (+) True G75422
TU111651 other downstream 1546885 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other downstream 1546885 7153586 ~ 7161263 (+) False LOC122352414

Expression Profile