RNA id: TU111267


Basic Information

Item Value
RNA id TU111267
length 2440
lncRNA type inter_gene
GC content 0.49
exon number 6
gene id G75191
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6148920 ~ 6155776 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGCTACAATTTAATATGCTGCAAAAACAACTCACGAGTCAACTGCATTGCTTCAAACATTTATTAGTTTTGGTTCTGAAGACATACTGGGCATACTGCACGCAAAATGCACACATTATGGTAGAGAGTCTTTTAACCCTTAACAGAGAAACGGCTTGAGTAAGAGCTGCGGGATGGTTGAACACTGGATGTACTTTGACTAGCAACACTTGAATCATAGGACGAGACCTGGGACCCAGGTGTATACTTGGAAGAGGCACTTGGAGACTGGAAGGAGCTAACATAGCTGGTGCTAACACCTGGTGCAGAAACAGACTGACTAGAAACCCCTGAAGATGACAGGGAAGACCACTGCACTGGTGAGTTGAGAGATGAACTCGTGGCTGAAAGCTGCCATTTTTGAGACTTCTGGCTTTGGGATCCAGAATATGGGTATGAAGACACAGGTGCAAACTGAGGTGACCCACCAGAAGCAGTGCTTCCATGCAGAGTAGATGATCCTGCCTGGGTGCCAGAAGTGCCTGTGAAGGTAGATGTCAACTGCTTCCGAAAACCCTGGACACTAGTAGATGGGCCAGTTTGTGGTGAGGACAGGGATAAGCTTGCATATGGGTATGAAGAGCCAGGGGCAATCCATCTAGCAGTATCTTGAAGCTGAGGTGAGCCATCAGATGCAGCGCTTCCCTGCAGAGTAGATGATCCTGCCTGGGTGCCAGAAGTGCCTGTGAAGGTAGATGTCAACTGCTTCCGAAAACCCTGGACACTAGTAGATGGGCCAGTTTGTGGTGAGGACAGGGATAAGCTTGCATATGGGTATGAAGATCCAGGGGTAAGTTGACTTGCAGTATCTTGAAGCTGAGGTGAGCCAGCAGAAGCAGTGCCTCCCTGCAGAGTAGATGATCCTGCCTGGGTGCCAGAAGTGCCTGTGAAGGTAGATGTCAACTGCTTCCGAAAACCCTGGACACTAGTAGATGGACCAGTTTGCGGTGAGGACAGGGATAAGCTTGCATATGGGTATGAAGATCCAGGGGTAAGTTGACTTGCAGTATCTTGAAGCTGAGGTGAGCCATCAGATGCAGCGCTTCCCTGCAGAGTAGATGACCCTGCCTGGGTGCCTGTGAAGGTAGAGGTCAACTGCTTCCGAAAACCCTGGACACTAGTAGATGGACCAGTTTGTGGTGAGGACAGGGATAAGCTTGCATATGGGTATGAAGAGCCAGGGGCAATCCATCTAGCAGTATCTTGAAGCTGAGGTGAGCCAGCAGATGCAGCGCTTCCCTGCAGAGTAGATGATCCTGCCTGGGTGCCAGAAGTGCCCATGAAGGTAGAGGTCAACCGTTTTAGTGACTCTTGAACAGAAGGACCAGTAACAGCTTGGGGTGAGGACAAGGACACACCTGTCAAGTAGGATTGAGATGCAGGAGCAAACCGTTTTGTACCTTGAGGTTGGACCAAACCACTGTAAGAGCCGCCCATGCCCTGTGAGGCAAAACCAGTACCAGTAGAGGCCCCAAATTTAGTTCCAGAGCTGCCCTGGGAGACAGAGGTATACTGCTTACGGGAACTCAAATCACTGGTGTACTGACTGAGAGTGCTTTGGGGTGAGGAAAAAGGCTTGGAGTTGCCAAGAACATTTTGACTAGAGGTAGCTTGAGACTGAGGAAGCAACCTACTGTAAAAGTTTCCTCCTTGAGGCATTAACTGACCAGATACTCCCATTTGAGATGGAGAACCAACTTGTGAAACTACTCTATAGGAAGAACCGCTATCTGTGGACTGGCTATACATAGCTTGGGGTGCAGACATGGGAACGCTCACATATTTGGTAGGAGATACAGGGGAATACCAACTCAGAGGGCCCTGAGGCTTGAGAGCTAAGCTAGGTAAAGCAGCATCTGTTGACTTTAAATCATAACTGAAACTAGGGGAGTTTTGACCATTCCTATACTGGCTAGATACCACCAAGGGCAGAAGCTGACTGGATGTCTCTAAGGAAGAGCCAGATGCTAAAGACACAAAAGAACTGGGGGAGCTCTGGTCAGTTTCCTGGGGGCTGGACACAAGCAAACCGTCACTAGTGAGCTGGCCATAGATGTCAAGCTTAGCAGGGTAATTGCTATATTCTCCCTGGGTAGAAATGATAGGCCCAGAACCACTTGCAGCATACTGTGGGTCAGAGGATGTCAAACTGGTCAATGGCCATTCATTTACAGGCAGAAGCAAGGAAGCAGATACAGAGCTGCTTGGAGAAGTTTGGGCATAGGATGTTGACTGAGAACTGCTGAAACCACCTTTGACAAACTGGAGTGGATTAAACTCTGTGCTTTCCAGGGGTTTAATGAACAAACTGGAGCCCACTTCTtctgacattgaagactggactGCACGAGGTGAAAAGGTGTCTGATGGCTGATGATGGGCACTGGAAGAAGCACCacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111251 lncRNA downstream 411 6145846 ~ 6148509 (-) True G75190
TU111250 lncRNA downstream 3343 6144094 ~ 6145577 (-) True G75189
TU111236 lncRNA downstream 60626 6084326 ~ 6088294 (-) True G75177
TU111189 lncRNA downstream 191427 5916058 ~ 5957493 (-) False G75138
TU111334 lncRNA upstream 116449 6272225 ~ 6277330 (-) True G75209
TU111465 lncRNA upstream 196759 6352535 ~ 6352884 (-) True G75297
TU111461 lncRNA upstream 225160 6380936 ~ 6382441 (-) True G75294
TU111566 lncRNA upstream 490148 6645924 ~ 6648670 (-) True G75366
TU111662 lncRNA upstream 874217 7029993 ~ 7082458 (-) True G75429
XM_043250529.1 mRNA downstream 16407 6097588 ~ 6132513 (-) True si:ch211-127i16.2
XM_043250955.1 mRNA downstream 196080 5946254 ~ 5952840 (-) True adra1ab
XM_043249959.1 mRNA downstream 398454 5663458 ~ 5750466 (-) True LOC122352526
XM_043249979.1 mRNA downstream 586308 5560925 ~ 5562612 (-) True ppp1r3c2a
XM_043249968.1 mRNA downstream 668159 5477583 ~ 5480761 (-) True si:dkey-200l5.4
XM_043251106.1 mRNA upstream 47802 6203578 ~ 6248076 (-) True gfra2b
XM_043251201.1 mRNA upstream 193444 6349220 ~ 6360655 (-) True LOC122353231
XM_043251209.1 mRNA upstream 227245 6383021 ~ 6384513 (-) True pbdc1
XM_043250063.1 mRNA upstream 255900 6411676 ~ 6420164 (-) True LOC122352601
XM_043249864.1 mRNA upstream 304412 6460188 ~ 6487724 (-) False LOC122352455
XR_006251921.1 other downstream 2236178 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 2236178 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 2541132 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 2808991 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 3951609 2194115 ~ 2197311 (-) False LOC122352692
TU111527 other upstream 382758 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 472649 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 472654 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 1021548 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 1021975 7177751 ~ 7180821 (-) True G75454

Expression Profile