RNA id: TU111315


Basic Information

Item Value
RNA id TU111315
length 1353
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G75192
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6179206 ~ 6204921 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aatatttcTGACATTActaggatgtttttattcagatttaaacaaatatttctgaCACATTCTTGAGCCTCTGTCTTGCctcattttaaagcatcacaAATGAACCAAGACCTTTTTGAGTCATAGAAGCTGCTATTTTTGAACGTCTGAAATCATCTCAGTCGGTCTTGGCGGTACTCTGCAAGTGGTACGGTCTGAAACCATTACataagagagagaaacagagcaaagacaaaaaagtaaGGCCACACGATAGATTGCACACTATAAAATACACCAACAATTGACCCTCTCCGCAAATGGATCTTTTGTTCCGTTCTCCCTGGAGcatttttctttgaatataATCCAAGTCTTTTGGCAAGAAAGAAATGATTACACATAATAACAGCCTAAGATGAACATCATTGGCACTGACGGCTCTCCATGGTGATACGTTTCACACGGCTCTCCGCTTTTGTTCTAGTTCCCCGCGTCGCTCGGCTTTCCAGCACATGCTAAAGGTTCTTTAGagataaaacaggaaaaaaaagaatctcaTATACTTACAAACATCATTATACACATTGTACACAGGGCAGTAGGATCCAAATCTCGCTGGATTAGAGAATCCAAACGTGTCGCGGATGAACACTTGTAGTTCGCCAGAAACAAATTTGTGGGCACAAATCGAGATTTTAtccatatcattttttttttttcgaacaaaagaaacatttacatgGAATTATTGGTAATGATCAAGGCAGTGAGCACTATTGTACTGATGTGCGCGGGGGAGATAGCgaaaagtttagtttttataatgGATGCTCTATATCTCTAGGTAAATATACAGAGAGTTCGTCATTGGGTCACATTTTATAGCATGTTCTCGATCAACCGTCAATCATGATATTGGAGAACCCGGTGGGCTGCTTTCCTTTTAGCATAAGACGTTTGTAGAAGTTCTCTGTGTTCAGTGTCAGCCGCTGGTGGTTCCTTGTTTTTTCTTCAATGGGGCAGTGGTGTTTCGAGTCTTGTAGAAGCTCCTGTGTGAAggatttgttgttttttgttccgacttgtttttaaagatggCGTGtgatgcacacatacacacacactaagagagagaaagatcaaTGTCACTTTAGAGAAGTTCTTTGATTGAGGTCAGAAGAATCCATCAGATGCTTCCTGGTGTTGTAGAGTCAGGCTGTGTTTACAGAACCTGATTGACCAGTGCAAAGGCCAGTGTCAGTGTGGCGGCAGAAACACTGATTGAAGTCACAGATGAATGTCTGGCTCTGTTGTTGTCAGCCTGGTGAGAGCCCACCGAGTCAATGGATCCCTCCATATTGGGGTTCAGCA

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process

KEGG:

id description
ko04721 Synaptic vesicle cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111146 lncRNA upstream 203648 5942274 ~ 5975558 (+) False G75102
TU111145 lncRNA upstream 233510 5942274 ~ 5945696 (+) True G75102
TU111138 lncRNA upstream 271679 5907179 ~ 5907527 (+) True G75097
TU111124 lncRNA upstream 457179 5663157 ~ 5722027 (+) True G75083
TU111119 lncRNA upstream 516131 5657359 ~ 5663075 (+) True G75081
TU111367 lncRNA downstream 337167 6542088 ~ 6544245 (+) True G75230
TU111374 lncRNA downstream 373251 6578172 ~ 6579929 (+) True G75236
TU111557 lncRNA downstream 439115 6644036 ~ 6650405 (+) True G75361
TU111558 lncRNA downstream 439115 6644036 ~ 6655910 (+) False G75361
TU111573 lncRNA downstream 530011 6734932 ~ 6759645 (+) True G75371
XM_043249823.1 mRNA upstream 23477 6154560 ~ 6155729 (+) True LOC122352406
XM_043249822.1 mRNA upstream 24798 6148020 ~ 6154408 (+) True LOC122352405
XM_043250188.1 mRNA upstream 31342 6139988 ~ 6147864 (+) True atp6v1b2
XM_043250530.1 mRNA upstream 39571 6132089 ~ 6139635 (+) True vsig8a
XM_043251164.1 mRNA upstream 89619 6061191 ~ 6089587 (+) False lrrtm4l1
XM_043249825.1 mRNA downstream 70799 6275720 ~ 6277124 (+) True LOC122352409
XM_043251205.1 mRNA downstream 158693 6363614 ~ 6395638 (+) False xpo7
XM_043251206.1 mRNA downstream 158693 6363614 ~ 6382449 (+) True xpo7
XM_043251207.1 mRNA downstream 161333 6366254 ~ 6395638 (+) False xpo7
XM_043251208.1 mRNA downstream 180597 6385518 ~ 6405231 (+) True dmtn
XR_006251967.1 other upstream 89619 6061191 ~ 6089587 (+) True lrrtm4l1
TU111087 other upstream 617121 5560651 ~ 5562085 (+) True G75062
TU111017 other upstream 678902 5498681 ~ 5500304 (+) False ccl19b
TU110943 other upstream 920383 5256838 ~ 5258823 (+) True G74965
TU110926 other upstream 929069 5238428 ~ 5250137 (+) False LOC122352567
TU111380 other downstream 249415 6454336 ~ 6472107 (+) False LOC122352486
TU111650 other downstream 937372 7142293 ~ 7150581 (+) True G75422
TU111651 other downstream 948665 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other downstream 948665 7153586 ~ 7161263 (+) False LOC122352414
TU111639 other downstream 1003614 7208535 ~ 7221528 (+) False LOC122353118

Expression Profile