RNA id: TU111553


Basic Information

Item Value
RNA id TU111553
length 1451
RNA type TUCP
GC content 0.42
exon number 2
gene id sprn2
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6628425 ~ 6631188 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGGTTGTTTACAGCAAAGAGTAGCTTGTCACAGTAAGGTTGAGCAGTTCAAGCGGTGAATAGAAGCCAGCGATCAGCACTATCACCAGGGAGCGCCAGTCGTGATGGGTAATCAGAAGATCCTGATCGTTTGGGTGTGGATGTTACTGTTGGCGTCGTTGCATCCCTGGGCGCACTGCAAGCGTGGAGGAGGTTTCGGTGGCAGGAGTAAGGGAGCGGGTCTGCCAGACAGAGCTCCTCCTTCCCAGAGCAAAGGCAGACAGGGCCTTAAGCTGGCAGGTGCTGCAGCCGCGGGGGCTCTCGGTGGAGCGGCCATCGGCTATGGGCTGGGCTCTTTGGGAAGGCCGAGGTATGGCTACGGCTACGATGGCTCCTCAGAGGGGGACAGGCGCTACGATGGACCGGGATACAATCGCACGGACTCGAGATATTACAGGAACAAAGGCAGCTCCGAACACGTGACCAGCGTCCTCATAATACTCGGAACGGTCACACACGTCTTCATGTGGGGATGAGTTCAGGGTTTGAGGCAGACGAGATGCAAAGAgggtttattttggatgcaatcaTTTTCGTTGGTAAAGTGTTTGATAGAGAGAAACCTAACGTACACCAGCAATATATTTGGAGAAATATGAAACTTATTAGACCGCACAAACTACTAGGTTACACAAACTACGGGTCAAATGTTAAAAGTGAAACTTAAAACGAAATTACATTGGCCTTGCAtacattttaacacacacacacacaccttgtgtGAATTACACTTATATACTCTGCACTTTGTAGTTCAGTTTGCTGTCTCTGTGAAcgtttgacagaaaaaaaaaatcaataaaacactgaCCATCGTTTAGTGATCTCACAGAACTTACCGGTATTTTGAGACAAATATGTGAATTATGCTTTACCGCCATCTTTGTACTTATCTGTTTGTATGGCAATTTAAGCTACTTAGCTACTTCTGAAAGCGACTAATGATGTATGATGATGTGCATATCCTATAATATATGTCCCAAATTGGTAGACCTGGACTgatttaaatatcagttttactatttaacatattcaaatattttagctATACGTGATGAATgtaaaattctatttaattcaTGTGTTGCTATACCACACAATTCTGCAATTATATGTCACTGTGGATTTTAATTTAGGATTTAATTTATTGGAGTCAAAAGTCATTCAATGCAACTGAATGACTTTTGACTATAGCTTTAAATAGCAATACAATTATTTGATGCAAACTCTTTTAGGGTTGGGCAAAATGAAAAGCAGCCTGACATAAAAGTGCTTTTGCTGTTCTTTTCGTTCCAGTGATATCATTTAATACGCTACTTTTGGTTTCAGGGTTTGAtttgtattttggttttaatgtcactgtgttCTCTTTGCTGTTTTCAgagtgaaatgaataaataattgacaGCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111461 lncRNA downstream 245984 6380936 ~ 6382441 (-) True G75294
TU111465 lncRNA downstream 275541 6352535 ~ 6352884 (-) True G75297
TU111334 lncRNA downstream 351095 6272225 ~ 6277330 (-) True G75209
TU111311 lncRNA downstream 472649 6148920 ~ 6155776 (-) False G75191
TU111566 lncRNA upstream 14767 6645924 ~ 6648670 (-) True G75366
TU111662 lncRNA upstream 398836 7029993 ~ 7082458 (-) True G75429
TU111667 lncRNA upstream 447398 7078555 ~ 7079365 (-) True G75433
TU111681 lncRNA upstream 476601 7107758 ~ 7231920 (-) True G75445
TU111703 lncRNA upstream 496431 7127588 ~ 7137401 (-) False G75459
XM_043250552.1 mRNA downstream 27034 6580621 ~ 6601391 (-) False nsd3
XM_043250558.1 mRNA downstream 27034 6580621 ~ 6601391 (-) False nsd3
XM_043250557.1 mRNA downstream 27034 6580621 ~ 6601391 (-) False nsd3
XM_043250550.1 mRNA downstream 27034 6580621 ~ 6601391 (-) True nsd3
XM_043250553.1 mRNA downstream 27698 6580621 ~ 6600727 (-) False nsd3
XM_043250753.1 mRNA upstream 524 6631681 ~ 6638407 (-) True rassf2b
XM_043250750.1 mRNA upstream 9836 6640993 ~ 6662838 (-) False kcnip3b
XM_043250746.1 mRNA upstream 9836 6640993 ~ 6662838 (-) True kcnip3b
XM_043250747.1 mRNA upstream 9836 6640993 ~ 6662838 (-) False kcnip3b
XM_043250749.1 mRNA upstream 9836 6640993 ~ 6662838 (-) False kcnip3b
TU111527 other downstream 87499 6538534 ~ 6540926 (-) False si:ch211-113d22.2
XR_006251921.1 other downstream 2715683 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 2715683 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 3020637 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 3288496 3337388 ~ 3339929 (-) False LOC122353137
TU111694 other upstream 546167 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 546594 7177751 ~ 7180821 (-) True G75454
TU111872 other upstream 895086 7526243 ~ 7528551 (-) False LOC122352929
TU111870 other upstream 899704 7530861 ~ 7544090 (-) True G75562
unassigned_transcript_1468 other upstream 1053485 7684642 ~ 7684723 (-) True trnal-uag_1

Expression Profile