RNA id: TU111608


Basic Information

Item Value
RNA id TU111608
length 284
lncRNA type sense_over
GC content 0.59
exon number 2
gene id trpc7a
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6981492 ~ 6993621 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGCTCTTGTAGAAAACGACCCCGTCAAGGCGGAGGCAGCGGAGGGATCCAGACATGAGTTCGGCCATCACGCGCACAGGTTGTTCGACAGCGATGACGACCTGGACTATCACGTGCACCATCACTGGCATCCTCACGAGAGCAACTCGCACTATTCCTTTGAGGCCATTCAGCGCAGACATACCACCCTGAGAGAGAAGTGCCGCCGGCAGGCCGTCCGTGGCCCCGCTTACATGTTCAGCGAGAGAGGCACCAGTCTGACCGAAGAGGAGGAACGTTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111573 lncRNA upstream 222166 6734932 ~ 6759645 (+) True G75371
TU111558 lncRNA upstream 325901 6644036 ~ 6655910 (+) False G75361
TU111557 lncRNA upstream 331406 6644036 ~ 6650405 (+) True G75361
TU111374 lncRNA upstream 401882 6578172 ~ 6579929 (+) True G75236
TU111367 lncRNA upstream 437566 6542088 ~ 6544245 (+) True G75230
TU111609 lncRNA downstream 6942 6992839 ~ 6993208 (+) False trpc7a
TU111768 lncRNA downstream 379520 7365417 ~ 7366605 (+) True G75498
TU111791 lncRNA downstream 412148 7398045 ~ 7399363 (+) True G75513
TU111792 lncRNA downstream 413531 7399428 ~ 7400033 (+) True G75514
TU111794 lncRNA downstream 416236 7402133 ~ 7408121 (+) True G75516
XM_043249827.1 mRNA upstream 355213 6625432 ~ 6626598 (+) True prnpb
XM_043251081.1 mRNA upstream 357597 6614030 ~ 6624214 (+) True si:dkey-81j8.6
XM_043250508.1 mRNA upstream 370936 6602377 ~ 6610875 (+) True letm2
XM_043249826.1 mRNA upstream 465884 6507050 ~ 6515927 (+) True r3hcc1
XM_043250140.1 mRNA upstream 475726 6502318 ~ 6506085 (+) True golga7
XM_043250022.1 mRNA downstream 77764 7063661 ~ 7076378 (+) True LOC122352574
XM_043250026.1 mRNA downstream 90664 7076561 ~ 7082454 (+) True LOC122352576
XM_043250027.1 mRNA downstream 90667 7076564 ~ 7082454 (+) False LOC122352576
XM_043250023.1 mRNA downstream 97075 7082972 ~ 7094576 (+) False fbxw11b
XM_043250025.1 mRNA downstream 97401 7083298 ~ 7094576 (+) True fbxw11b
TU111380 other upstream 509704 6454336 ~ 6472107 (+) False LOC122352486
XR_006251967.1 other upstream 892224 6061191 ~ 6089587 (+) True lrrtm4l1
TU111087 other upstream 1419726 5560651 ~ 5562085 (+) True G75062
TU111017 other upstream 1481507 5498681 ~ 5500304 (+) False ccl19b
TU110943 other upstream 1722988 5256838 ~ 5258823 (+) True G74965
TU111650 other downstream 156396 7142293 ~ 7150581 (+) True G75422
TU111651 other downstream 167689 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other downstream 167689 7153586 ~ 7161263 (+) False LOC122352414
TU111639 other downstream 222638 7208535 ~ 7221528 (+) False LOC122353118
TU111640 other downstream 257370 7243267 ~ 7257229 (+) False LOC122353118

Expression Profile