RNA id: TU111640



Basic Information


Item Value
RNA id TU111640
length 568
RNA type TUCP
GC content 0.44
exon number 2
gene id LOC122353118
representative False

Chromosome Information


Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7197537 ~ 7340195 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCTGATGCTGCTAGGAGATTGTGGAAGAGACTAAAGAGAGTCAGTGAAGGGAGACAGTCGCTGGCTAATAGCGAAGGAACTGATATGTTTGCGGATATTTGATTGCGGACCATTCGTCTACGATTTGTGATTTAAATGCTTAacgtataaaaatgtttattattagagCTTGTAGGATTCGTTTTTGCAAATCGCAAGGACAGCCACTGGATCGTGTTTTCTTATGGAGGGTGTTATTCATCATGGCTTCTTGTTCGACCTCAATCATAAACGCTCAGATTCGTTACTCCGTTccagaagaaatgaagaaagGGTCTCTGATCGGGAATATAGCTCATGATCTTGGTCTGGATGTTCAAAGACTGCGTTCGGGTCGGGCTCGTATCGTGTCTGGCGACAGCACCGAGTACGTAGAGCTGAAATCAGACAAAGGGATTTTGGTTGTAAAGGAGAGAATCGACCGAGAGCAGCTTTGCGCTGAAACCACTCCGTGCAGCTTCACGTTTGAAATAATACTCGATAATCCAGTGGAGCTACATCACGTTACGGTGGAAATACTGGACGTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111609 lncRNA upstream 250059 6992839 ~ 6993208 (+) False trpc7a
TU111608 lncRNA upstream 257370 6981811 ~ 6985897 (+) False trpc7a
TU111573 lncRNA upstream 483622 6734932 ~ 6759645 (+) True G75371
TU111558 lncRNA upstream 587357 6644036 ~ 6655910 (+) False G75361
TU111557 lncRNA upstream 592862 6644036 ~ 6650405 (+) True G75361
TU111768 lncRNA downstream 108188 7365417 ~ 7366605 (+) True G75498
TU111791 lncRNA downstream 140816 7398045 ~ 7399363 (+) True G75513
TU111792 lncRNA downstream 142199 7399428 ~ 7400033 (+) True G75514
TU111794 lncRNA downstream 144904 7402133 ~ 7408121 (+) True G75516
TU111772 lncRNA downstream 230246 7487475 ~ 7488567 (+) True G75502
XM_043251047.1 mRNA upstream 1212 7240323 ~ 7242055 (+) True LOC122353134
XM_043251039.1 mRNA upstream 35737 7204157 ~ 7207530 (+) True LOC122353123
XM_043250984.1 mRNA upstream 46863 7163272 ~ 7196404 (+) False LOC122353116
XM_043250983.1 mRNA upstream 46863 7166338 ~ 7196404 (+) True LOC122353116
XM_043250982.1 mRNA upstream 46863 7178029 ~ 7196404 (+) False LOC122353116
XM_043251012.1 mRNA downstream 2538 7259767 ~ 7340195 (+) False LOC122353118
XM_043251013.1 mRNA downstream 2538 7259767 ~ 7340195 (+) False LOC122353118
XM_043251034.1 mRNA downstream 2539 7259768 ~ 7340195 (+) False LOC122353118
XM_043251005.1 mRNA downstream 6637 7263866 ~ 7340195 (+) False LOC122353118
XM_043251028.1 mRNA downstream 6637 7263866 ~ 7340195 (+) False LOC122353118
TU111639 other upstream 21739 7208535 ~ 7221528 (+) False LOC122353118
TU111651 other upstream 82004 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other upstream 82004 7153586 ~ 7161263 (+) False LOC122352414
TU111650 other upstream 92686 7142293 ~ 7150581 (+) True G75422
TU111380 other upstream 771160 6454336 ~ 6472107 (+) False LOC122352486
TU111766 other downstream 103755 7360984 ~ 7365331 (+) True G75496
XR_006252001.1 other downstream 604017 7861246 ~ 7861379 (+) True LOC122353465
unassigned_transcript_1470 other downstream 604364 7861593 ~ 7861674 (+) True trnas-gcu_13
unassigned_transcript_1471 other downstream 604731 7861960 ~ 7862033 (+) True trnat-agu_2
XR_006252002.1 other downstream 606550 7863779 ~ 7863912 (+) True LOC122353466

Expression Profile