RNA id: XM_043251010.1


Basic Information

Item Value
RNA id XM_043251010.1
length 4569
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC122353118
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7197537 ~ 7340195 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGTccagattttattttcttgcacGGATTTTCTGTAGAACACTCGTCGTCGGGTACATCCATAATTAAAGTcaacacatttcatttcattttataggCTTAAAGGATACATTGTTGTTTCTTATTGGATCATCGGTGCAGTTGAGACAATGCCGAATGCAATGATGAGACCTTTGGTGCTGTTTTTTACTCTTCTGCTTCATATAGCGCGAGGACAAGTCAGTTACTCGATTCCTGAAGAAATGGCAAAAGGGTCGACGGTGGGAAACATTGCGCAAGATTTGGGCTTGGATTTACAACGATTAAAGTCAGGAAAAGCGAGAATTTATTCAAGAGACAGCACGGAATACATTCAACTGAACAGAGATACTGGATCGCTGCTCATCAAAGAGAAAATGGATCGCGAGTCTCTTTGTGCAAAAACAACTCCGTGTGCGTTGCACCTTCAGATGATTTTGGAAAACCCGATGGAATTTTACACTATTACAATAGAAATCACGGATATAAATGATAACGCTCCTGTTTTCCAGAGAAACGGATTTAGATTTGAGATCAGCGAATCGGCGGCGGTGGGTGCTGGTTTTATGCTCGGGAGAGCTTTCGATGCGGATGTAGGAACAAATGATCTTCAGAATTACTCGCTTAAACCGAGCGATCAGTTCCGTCTTGAACTACACAATCAGGCAGACGGTAGTAAAAACGTCGAGATGATTTTACAAAGACCACTTGATAGAGAAACGCAAAGCTCGCTTACTTTGTTGTTAGAAGCGTTTGATGGAGGCGATCCGGTTCTCTCTGGCACTGTACAGATACACATCACTGTGTTAGACAATAATGATAATGCTCCTGTCTTTACACAAAAAGTATATAAGACCACGATAACAGAAAACGCTCCAAAAGGCACAATATTAACAGTGGTGAGCGCGTCTGATGCAGACGAAGGATCCAACAGTGTAGTGACTTACTACATATCTGACACAGTAGAGAAAAATGTGGCCGAGATATtcttaattaatgaaaaaagtgGTGAACTAATATTAATTGGTGAGGTTGACTATGAAAAGGTGAGCCATTATGAACTTAATATTCAGGCAAAAGATCAAGGAGGACTATCTAACGCATGCAAAGTAATCATCGACGTTCTGGACATTAATGATAATTTGCCTGGTATTCAGATTCTTTCTAGTTCTCAGTCAATATCTGAAGGGTCAAAGTCTGGTACTGTTGTTTCAGTGTTAAATGTTGACGATCTTGATTCAGGTATAAACGGTCAGGTTCAGTGTGTCTTAAATGACGACATTCCCTTTTCTATTACTTCTCCGTCTAGCAATTTCTTCAGTTTACAAACAGAGCAGGAactagatagagagagaaaagctgAGTACAATATCATTGTAATATGTGCTGATGAAGGGGTGCCTGCTCTCTCCAGCAGTGTCTCTCTCCGTGTGCAGATATCAGATGTGAATGACAATGCTCCTGTCTTTGAGAAAAGTCACTATGAGGCGTCTGTGCTGGAGAATAACACACCTGGTCTCTCTATATTTACAGTTAAAGCCAGTGACTCTGATTGGAATCAGAATGCCCGTGTTTCTTATATTCTAGAAGACAGCTCTGTTAATGGAGTCTCTGTCTCATCATATGTGTCAGTTCATCCTGACAGTGGACTGATTACAGCTGTGCGCTCTTTTGACTATGAACAGCTGAAAGACTTCCACTTCCGGGTGAAAGCACAAGATGGAGGCTCTCCTCCGCTCAGCAGTAACGTGACagtgaaaataattattcaagATCAGAACGACAACGCTCCTCAGGTTCTGTATCCAGTACAGACTGGTTCTTCTGTGGTGGCTGAGATTGTGCCTCGTGCTGCAGATGTTGGATATCTGGTCACTAAAGTGGTGGCTGTTGATGTGGACTCTGGACAGAATGCCTGGCTCTCCTATAAACTACAGAAAGCTCCAGACAGAGCGCTGTTTGAAGTGGgtttacagaatggagaaataagAACTGTGCGACAAGTGACTGATAAAGATGCCGTCAAACAAAAACTGACTGTTGTTGTGGAGGATAACGGACAGCCCTCTCGCTCAGCTGTGGTCTCCATTAACGTGGCTGTAGCTGACAGCTTTCCTGAAGTGCTGTCAGAGTTCACAGACTTTACGCACGAAAAACAGTATGATGAGAATCTAACCTTTTATCTAGTTCTCGCACTGGCTGCTGTTTCCTTCTTATTTATCACTTGTGTGGTTGTCATAATATCAGTAAAGATCTACAGATGGAGACACTCTCGCTTCTCATATCAGTCCAATCTGCCTGTTATTCCGTACTATCCACCGCATTACGCGGACACAGGAGTCACTGGAACTCTGCCGCACGGGTATAATTATGAAGTGTGCATGACGACTGACTCGAGGAAGAGTGACTGTAAGTTTTCTACACTCGGTGGGAAGAGCGTTTTAGTCGTGGACCCGAGTTTCACTGAGACCATGCAGCGCGCAATTAAGGAAAATAACGGTTTGGAAAGTGAATATTCGACATCGCAAAAGCCACCTAATGCTGACTGGCGATTTCCCCCAAACCAGAGGCCTGGACCCAGCGGCCAACACAGGTTCCACACCCTGCAGCAGAGATGGACTCCATACGAGAAGTCCAGGGCTGGAGCTCATCCGGGTGAAGCAGGTGCCGGCGCTGGTGTGATCGCAGGAACAGGACCGTGGCCCAACCCCCCCACCGAAGCTGAACAGCTCCAGGCTCTGATGGCGGCAGCGAACGTAGCAAGCGAAGCCACCGCGACTCTCGGCCCTCGCTACAATCCCCAGTACGGCCCGGACTTCCGTCAGAACGTCTACATCCCGGGAAGCACCGCCACCCTCACGGCCAACCCTCAACAGCAGGTACCCCAGCAGGCCCTTCCCCCTCCCCAAGCCCTCCCTCCCGTCGAAGCCCCCAAGGCAGCTCAGACGCCCGCCAGCAAGAAGAAGCCTACCAAGAAAGACAAGAAGTAAGACGGAAGCACTATCAGAGCTGCAGGAGTATGTCGCCAGGATCTGAGCATCTCTCCTCAAAAAATGAGTCCACAGGGTTCGGAGGAATAATCAACAAGctttacatgtaatttttttttcagtggtaTTTGCCAATTTTTAGTTATCGTATTTTGAATTGTGCTACAATATCTTACTCAATACCCCCACGAATCAAGCATTCCCTGAAACGAACAGAACGGCTGAACGAGAGGAGATGTGTTCAGATTCCTGAAGCTCTTTCTTTGCCAGATAACGCTGTCTTGTAAATAGCATTactaaaacaagaagaaaatatacatttcttcttttatttttttcccccaaatgtCATGTTTCAGccttctttttgtgtttttttttttttttaaaaaagcaaagtaGATGCTTCTTGTGGTTACAAAATGAAACGCTGgtaggctttttaaaaatgtgccacAACTCTCACCTTGACTGAATTAAAAGAGCGTTGAGCTGAACTATGCAGTGAAAAGGGGatactaagaaaaaaaagagggcaCAAGAAAGTATATTTAACTAGTTACATTACATGTGGTGAGACAACGTCGGCATGGTCTTTACAAATAATTCAATCTTCATTAACTTCTTAATAGCCAGAGCTGAATGTTAGGTTAACAACATTTAACTattctttgcttttatttcctgTTAGCCTGGTATAAGAATCCTAGAAATGCAAGTGATGTAAACAGTGTTGCTGAAGCTCAGAAAAGATCATCTCAGCCTTTGTAAGGTTTAAGATTTagaaagagttaatgggtgAACCCAAAAAGAAAGAATCAGATAATGAACAAGCGGAAAGACTAATAAGTAACCTAAGCACAACGCTGTACTTGAATGGGTCTTAGATGGAAGGATTCTGTCCATTGTTCTGCACCAACCACCATcacaatgtatataaaatgtgtaaccTGTCTGTACAAACATTAGAGCCACAAGGGCTGGCTGTTACAGGaatgtttcagtattttttaaaaaaaaaagcaacaaaaaagaCGATAGAAAAAAAGATCCAGTGTAGTGTTGTAGGAAGAAAAGCTTCGAAATCGTTAACTAACCAAACTGTACATACTACAACTTCTGAAGACACGCAATCGTAGCTTAAGGCTTGTGGAGTATGtgcatatttttgtgtttttcccccTTGATTACACTTTTGAACTTTCCTTTTCTCCGATCACCTAAAACTTTGAAAGATAACAGACGATACTTACTGTCTTTAGAGTACCACCCCTCCCCACATCTTACTGTACTTTTCTGTGCTTGTAATTCCAATCAGTCGGTAATGATACTGGAATGCCACTCCTGTCTGTTTGACTatgaatatctatctatctatatataaatgtctGTCTGCTGCTTGGCTACCTTCTGTATTTGGCTGTGATTCCTTTAAAGAAACGCTTAGCACCTCATGTTACCCTTTTAATTTTATaagctaatatttatattgctgttgatttatgttttactttattattggAACacttacatttgaaataaaattttgtcaGAACTCACA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111609 lncRNA upstream 278697 6992839 ~ 6993208 (+) False trpc7a
TU111608 lncRNA upstream 286008 6981811 ~ 6985897 (+) False trpc7a
TU111573 lncRNA upstream 512260 6734932 ~ 6759645 (+) True G75371
TU111558 lncRNA upstream 615995 6644036 ~ 6655910 (+) False G75361
TU111557 lncRNA upstream 621500 6644036 ~ 6650405 (+) True G75361
TU111768 lncRNA downstream 25222 7365417 ~ 7366605 (+) True G75498
TU111791 lncRNA downstream 57850 7398045 ~ 7399363 (+) True G75513
TU111792 lncRNA downstream 59233 7399428 ~ 7400033 (+) True G75514
TU111794 lncRNA downstream 61938 7402133 ~ 7408121 (+) True G75516
TU111772 lncRNA downstream 147280 7487475 ~ 7488567 (+) True G75502
XM_043251047.1 mRNA upstream 29850 7240323 ~ 7242055 (+) True LOC122353134
XM_043251039.1 mRNA upstream 64375 7204157 ~ 7207530 (+) True LOC122353123
XM_043250984.1 mRNA upstream 75501 7163272 ~ 7196404 (+) False LOC122353116
XM_043250983.1 mRNA upstream 75501 7166338 ~ 7196404 (+) True LOC122353116
XM_043250982.1 mRNA upstream 75501 7178029 ~ 7196404 (+) False LOC122353116
XM_043250850.1 mRNA downstream 20883 7361078 ~ 7362538 (+) True cbln17
XM_043250847.1 mRNA downstream 22485 7362680 ~ 7371933 (+) True LOC122353014
XM_043250848.1 mRNA downstream 22485 7362680 ~ 7371933 (+) False LOC122353014
XM_043250849.1 mRNA downstream 22485 7362680 ~ 7371933 (+) False LOC122353014
XM_043250087.1 mRNA downstream 40881 7381076 ~ 7386994 (+) True hrh2b
TU111640 other upstream 14676 7243267 ~ 7257229 (+) False LOC122353118
TU111639 other upstream 50377 7208535 ~ 7221528 (+) False LOC122353118
TU111651 other upstream 110642 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other upstream 110642 7153586 ~ 7161263 (+) False LOC122352414
TU111650 other upstream 121324 7142293 ~ 7150581 (+) True G75422
TU111766 other downstream 20789 7360984 ~ 7365331 (+) True G75496
XR_006252001.1 other downstream 521051 7861246 ~ 7861379 (+) True LOC122353465
unassigned_transcript_1470 other downstream 521398 7861593 ~ 7861674 (+) True trnas-gcu_13
unassigned_transcript_1471 other downstream 521765 7861960 ~ 7862033 (+) True trnat-agu_2
XR_006252002.1 other downstream 523584 7863779 ~ 7863912 (+) True LOC122353466

Expression Profile