RNA id: TU111685


Basic Information

Item Value
RNA id TU111685
length 3121
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G75446
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7204180 ~ 7211461 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTAGAtttaggggcggggttaggtgttagtaatttaaaaaaatttaaacgaaGTGGCAACTCGACCTTGTATGAATTGCCGTGAGATTGGGCTGGAAATACTATAATTAGAAATAGTCGAGAAGAGTTAAACTTCTCTTacctcattttcatttcctgtAAAGTCAAGTGTTATCATGCTCGAGCCAAACTGAAAATCGTGTTCCTTTTTCAGAGTACAGCCAGCAGgaagtgtgttttcattatacgaGTTCACAAACTTAAAGTCACTGGTGCGCGAGCCTGTGGTTAGATACGCGTCATAATTGTAAGAGCTGCGGAGAGTTCCTGCTCCATCCACCTCTGCATAGTTAGGAGGAAGATAGGCGCTGGGAACAGCTACTGCTCCATCAAACAACAGTCTGGGCTTTCTCCTGTGACAAAACTTCACTGCCACGATCAGTATGATGAACGTCAGGAAGAAGGTGGACACAGAAACTAATGCAATGATCAAGTAAGACGTCAGTTTAGAGTTGTCCTCATAAGTCATATCTTTAAGTTCAGGAACTTCAGAAAGATTGTCAGAAATCAGTAAATTTACAGCACAGGTTGTAGACAGAGAGGGCTGTCCGTTATCCTTCACTGAAATAACGAGGTTCTGCTTCATATTGTCAGATTCAGAAATGTCTCGCTGTGTTTTGATCTCTCCACTATGAAGACCAATGGAGAAAAGTCCAGGATCAGGAGATTTGACAATCTGATAGGACAGCCATGCATTCTGTCCAGAGTCAGCATCTACAGCGATCACCTTGGACAccagagagccagagagagtCGCTTTAGGGACCATTTCAGTCATTAGAGACTTTCCATCAGGAACAGGGTATAATATCTGTGGAGAGTTATCGTTCTCATCTGTTATGAAGACTTTGACAGTCACGTTACTGCTGAGCGCTGGAGATCCATTGTCTCTGGCAACGACTTTGACAGTCAAGTTTCTGAACTGTTCATAATCAAATGATCTCACACCGTGAATCACCCCTGTATCTCCATTAATAGATAGAAAGGAGGACACCGGGACCCCATTGACTTCACTGGGAACCAGAGAATACAGTACAGTCCCGTTCTGTCTCCAGTCTGGGTCATTTGCACTGACAGAACAAACAGAAGTGCCTGGTTTGTTATTTTCACTTATATAAGCACTGTAGGACTGCTGCTCAAATACAGGAGGATTGTCATTCACGTCTgagacaaataaatgaattgtcaTGGAGGTGGATAATGGTGGAGATCCCCCATCTGTGGCTGTGATGGTAATGTTATAATCAGATTCTTTCTCTCGGTCTAGAGCTTTTGTAGTTACCAGAGAGAAATAGTTTTTAACAGATGGGTTCAGTTTGAAAGGAACATTTTGCTGAACAGAACAACGAATCTGACGATTTTCTCCTGAATCTTTGTCCTGAACATTAATGATTCCCACCTCAGTACCTGGATCAGAGTTTTCAGATACTGGATTATTCAAAGATTTCAGGATGATTCTAGGTGGATTATCATTAACATCAGTTATATCTATCATCATTTTAGCAGTTGATGCCAATCCAGATGCATCTTTAGCTTGAATTCCCATTTCatactttttgtctttttcataaTCAAGTTCTCCGATCACAACAATCTGCCCTGATTccttattaatagaaaataatttagcaGTTTTATCTGACATTCTACTAAATTCATAGGTCACTTCCCCGTTTGGACCTTCATCAGCATCAGTTGCACTCACTCTGATTATTTCTGTTCCTGAAGGTGTATTTTCAGCCAGAGTGACTTTATAAACAGACTCACTAAACACCGGGACATTATCATTAGCATCGAGAACAGTGATGTGTATGACAGCAGTGCCAGACCTCTGCGGTGAACCACCATCAGTGGCTGTGAGTATCATATCTATCTCCTTCTGCTGCTCGCGATCCAACTCCTTTTCCAACACGAGTTCAGCGTATTTCCCTCCATCTGCACTATCgtgaacatttaaaacaaaatgtctatttctctgcagtgaatagcTGTTAATGGCATTTTGTCCAATATCAGTGTCATGCGCCTCATCTAAACGAAATCGCTGACCTTTAATTGCTGATTCTCTGATTTCAATTTTTATATACTCATTTGCAAATCGCGGTGTATTGTCATTTATATCTTGAATTTGAAGAATTATACGATGCACTTCAAGAGGGTTTTCCAGGACGAGCTCATAACTGAGAATGCAGGGAATTTGTGATCCACAAAGCTCCTCTCGATCTATTGTCTCTGTCACGATTAAATCACCAGAATTCAGATTAATATCACAGTACCGTTTGCTGCTGTCCTCTGTTTCTATCCGAGCTTTACGAGCAGATAATTGCTTCACTTCCATCCTCAGATCCTTCGCTATATTTCCAATCACATACTGGCGCTTCGTTTCTTCCGGAATATTGTAGCTCAAATCATCGCAGACGGTTCTCAGAGCAAAGAGAATAAGAGCAGCGAAACACGTTAAAAAAGGAGCTGAAAATAATCCGTGTTCCATTGTTAAAGGTTTAATCTTTCAATCATCAACAGTAAATGTCTGCTGAACGGAGGATTTTCTAAGCTATCTCAGCCTCGACGGACGCTTACTCCATTTTGTGCGGATATTCTTACAGACAGATCTCATGCTGCATACATTAAGTGTGGGAGGAGAGACACAGCTGTCTTGGTGAACAGCGACTCTGTGAGTTTTTTTGGGCTCATTGcatcattaatgcatttattgaaaagaCAGAGGATTAATCATTCGAAGTGTGATGTTGGTCAACGCATCGATTTACATCAATATAAgttcagataaaaataaattaaaaactgccACACATTCAGAGATGAAGAACAACAGACAGTCCTGGCGCTGTCCGGGTTCGTGGTGCTGAAACGGGATGAGCTCAGAGATATTCAACCAGACCATTGTAACGTAAATTTCGATTCCTATTGAACAAAAGAGTAAATCggttttaaaagaaagttacgcttattattttattcagcacgTCAACCATTTTTTCGTAAGTTTTAACGTCCAAGTAGAATAAATACCGGACTCACGGTGACGATTCTTGTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111682 lncRNA downstream 7735 7176946 ~ 7196445 (-) False G75445
TU111714 lncRNA downstream 33562 7158031 ~ 7170618 (-) True G75465
TU111716 lncRNA downstream 33562 7160443 ~ 7170618 (-) False G75465
TU111712 lncRNA downstream 44720 7154148 ~ 7159460 (-) True G75463
TU111708 lncRNA downstream 50083 7145981 ~ 7154097 (-) True G75460
TU111689 lncRNA upstream 1409 7212870 ~ 7221928 (-) True G75450
TU111729 lncRNA upstream 21912 7233373 ~ 7270706 (-) True G75475
TU111736 lncRNA upstream 35092 7246553 ~ 7259394 (-) True G75477
TU111737 lncRNA upstream 35092 7246553 ~ 7252654 (-) False G75477
TU111738 lncRNA upstream 36978 7248439 ~ 7255949 (-) True G75478
XM_043250029.1 mRNA downstream 102100 7094646 ~ 7102080 (-) False fgf18b
XM_043250028.1 mRNA downstream 103496 7094645 ~ 7100684 (-) True fgf18b
XM_043250837.1 mRNA downstream 144419 7057711 ~ 7059761 (-) True LOC122353004
XM_043250854.1 mRNA downstream 226800 6975201 ~ 6977380 (-) True avd
XM_043250708.1 mRNA downstream 397769 6734920 ~ 6806411 (-) True pcdh1a
XM_043250202.1 mRNA upstream 178709 7390170 ~ 7414256 (-) True LOC122352679
XM_043250201.1 mRNA upstream 178709 7390170 ~ 7399449 (-) False LOC122352679
XM_043250204.1 mRNA upstream 189186 7400647 ~ 7414303 (-) False LOC122352679
XM_043250203.1 mRNA upstream 189186 7400647 ~ 7414303 (-) False LOC122352679
XM_043250206.1 mRNA upstream 203932 7415393 ~ 7425751 (-) True LOC122352681
TU111694 other downstream 23359 7177324 ~ 7180821 (-) False G75454
TU111693 other downstream 23359 7177751 ~ 7180821 (-) True G75454
TU111553 other downstream 573023 6628425 ~ 6631157 (-) False sprn2
TU111552 other downstream 573023 6628430 ~ 6631157 (-) False sprn2
TU111527 other downstream 663254 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111872 other upstream 314782 7526243 ~ 7528551 (-) False LOC122352929
TU111870 other upstream 319400 7530861 ~ 7544090 (-) True G75562
unassigned_transcript_1468 other upstream 473181 7684642 ~ 7684723 (-) True trnal-uag_1
TU112043 other upstream 639560 7851021 ~ 7859708 (-) False vamp2
unassigned_transcript_1469 other upstream 648761 7860222 ~ 7860303 (-) True trnal-aag_32

Expression Profile