RNA id: TU111766


Basic Information

Item Value
RNA id TU111766
length 3648
RNA type TUCP
GC content 0.38
exon number 5
gene id G75496
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7360984 ~ 7365331 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAGAACTTTGCTCTTGAGCTTGTCATTGGATGAATTATATCTGAGTCAATAAAGGCTAGTAATGATTAACCTCGTCAAatccagttattttttttttcctcaaaccCAAGTGTTTTGCCTGCATCAAGATGAAGGTGAGTGCTGCTCTCCTGCAGCTGCTGTGCTGTCTTCTGCTCACTGAAGGACAAACGGAGGTGCCGGATTTTGAGTCCAATGGAAAAAGCATCCAGCCCAACATCTGGACCGAGGAATTACtgatcaaatgaaaataatcgaAAACCAGCTGAAAGgaattaagaaagaaaatgaagAACAACCAAAAGTGGCGTTTTCAGCCGACCTAGGCATTCGAGGGGATTTAGGTCCTCAGAGTACTGAGATCACGCTGACGTTCAACAACATCTTCACGAACACTGGGAACAGCTACAATCCAGCAACAGGTCTCTTCACTGCACCGGTTAAAGGAGTCTACTACTTCAGATTCACCGCGTGCGGTACTCAAAGCGCACAGTCGCTGGGGGCCAGTTTGCATAAAAACGGGCAGAAGATCGTGTCAGTGGGCCAGTGGCGTAATCACAATCTGCACAGATACGCATCAAATGGAGCTGTCCTGCAGCTGGAAGTGGGTGATGTAGTTTGCGTGAAGCTCCTCCCACATTACACCATCTATGACAGTCCAGATAACCTCAGCACTTTCAGTGGATTCCTCATTCACCCGTTAAAGTGATCAACCATCAAGCACGTTGTTCTCATGAAAACTGCACAAATCACacttatgctttattaatcatatATTCACCGTGAAAAAATCCAACTGCAATAATGATTTCATATGCTATTGTTTGTATTAACtacttttgtatttatgtaatagCATATTAAACATACCAATTTAAGAGGAGACACTAcaggcaaaaacattttttatgcacCTGTCAattctgagatttttttttttttttcagactagtGGACATCCAAAAGACACTGTTAAGTATTTCCTTTAGAGCACTTTATCTATTTGTATAAATAGATTTTCAATTACAATACGTATTTTTTAAAGGCCGTTTtctcaaaattataattttttcttctaCACTGAGCCATACATTtccacttcagcagcacttaCACACACCAGTTTTATTAACGGTCACACcctgaagttttttttacagaggaagtcgttcataaatcattttcttgATTATACGCAACATTTATgtacacacaatcacacaaaaaTTGTTTTAGTTCTAAGCATATTCAAAATTGTGgagtatatacaaaaaatagatgtttaaaatatcttctgtaAAAAGGTTTAACTctaatatgtcaaaaaaaaatcatccagtGGATATATTGTTGTACTAGAAATCATTGCAAATTAGCGCCATCAGCTGGGGCTGAGGCAttaactatttattatatatatatatatatatataaggcgaGAGGTATGCTCCTGGGATTGTAGAATCTCTGATCACATTGTTGTTAAAGGCTGACATCTAGTGTTAAACTTTGGACATCTGCACATGTAGAAAAACAGACAcagatcatttacaaaaaaactctacattacaacacacacacatacacacacacacatatacatatatccGTGGGGATGGTTTGTGGAATATTTCTTTTAACTTTctgaaaaggaaaggaaaagaaaactgATTGATgttgtgactttttaaaatttagaaCTGGTCTAAACTAACTTTTCTATGTATATAAGATACATATAACACATATACGTAAGATGTGTGCATATTATATCTGTAGAAATCTGATTattccaataaaataaaattgcaataaaataacttttagatGTTATTTATCATTTTCCCCCATTTTCTTTCCCAAAGcaattatatagaaaataatacaCAGTAAACCACATGTTATTACACATTGGACAGgctttaaatcaataaaatctcattttaaaatctaataaaaccAATTTAATTGAccatctaataaaataaaattattttttatttaatgtttgattttaaatcatttatttttgttattttctttgaatttcCCTACTTTCAACAGTTTTAAGAGAATCAAAAtcacaaataacaaataacatttcatttcattttcagcttCATGCAAAAATCCAAACATTCCTTTACCTCATCCATCAACCTGTTTTTCTATAATGTTGGTAATTTTCACACAACCCCTTGGCACGCACacaacctctctctctctctatctctccctttctatctctctttctctccccacCCTGCCTAATTTCAGCTGAATTTAGGATGCCTTTGACCCAGCACTGGATATGCATATGTGAAGCAGggtgagacagagagatagggtgagggacagacaggaagagtgactcagagagagagagagaaagcgagaaagagagagtgcgCAAGGCTGAGGACACTGATCAATGCATCTTTGTGCTTGCTGCCTCAGCAAGTGAAGGTGAGagcaaatcaaaacaaatgaaaagcaGACGCCTCTGGAGAGAAGCAAACAGCCTCCAATCAGCCTCTGAGGGAGGATGATTACTGTCTGCGGAGAGCTAGAGGAGTGACTGTCAAGGCAGGTGCTGTTTAAACACAAGCTCATGTGCGGATTTGAGTCATCTTAGAGTCTCCTCACTGCACCCACTTACTGGACAGCGAGACCTTTTGTGGATACTGAAAGCTTTAGAAAAATACCTGCACCATGGCAGGAAGCTTTGGGGGTTCGAGTCTCAGGATGTAACTGAAGGTAGGTGCTTGTTTacgtacaaaataaaagtccagcGTTTCGTGTTGTGGTCCGTATCGGGTTTCTGCGAGGTGTAACTGATTCCAAGCGGTCCAATGCCGTGCCAGAGCCGTGGCCTAGCGGTTAGCGCCGTGAGCTGTGGCGCTCATGTAAGTTTGAATGCAGCTCGCAACATTTCTTGATCCCATTCCTCTGCTTTTCTTGCCgtctttttgtgtttatctGCAATAAAAGGCAGCATGATTGTTGTGATATCTGAAGGAAAGGCTGTGAGTCTTGTGCTTCATAGACTACAATCTTTCCTAGACTGACTTCAGGCTGTTGTCATGTGTGGTGCCACAGCCTGGTGCCACCCAGAGGGGTCAGCTTGACATCCACAACAGAACATCAAGAAAGAGAGATGCTAGGGGGAATGAACAACAGGATGATCTGAAATGTTTGCACATTCAAGGCTGGGGGCTgagggaatgtgtgtgtgttcactggaAATGTGATGGCGAAACAGTAAGTGCTGATTGGAAAGTGATTCACATGCACGGCATAATCTCAAAGTACCATGAGtctttatagtttttttccatACCATGATTATATTTTTCGAAACACACATGAATGATTGTTTTTCTGTCATGGAATGGGACTTCACCCCCTTTCATCTCACAAACCGTTCTGATTTTCATTCGTGTTTAAACTGAATCAAagagtcatttaaaatgacaaacaaaacaacagcattttatttggattaataaatgcaattaacaaAGTAACAAACGAATTAacaaagtaaatataattaacaaaGTAATATCTAACAGTTCTCCAATCAATTGAGTACAGTTACAGTAACTGAGTTTTATAGAAAGCTtggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111609 lncRNA upstream 367776 6992839 ~ 6993208 (+) False trpc7a
TU111608 lncRNA upstream 375087 6981811 ~ 6985897 (+) False trpc7a
TU111573 lncRNA upstream 601339 6734932 ~ 6759645 (+) True G75371
TU111558 lncRNA upstream 705074 6644036 ~ 6655910 (+) False G75361
TU111557 lncRNA upstream 710579 6644036 ~ 6650405 (+) True G75361
TU111768 lncRNA downstream 86 7365417 ~ 7366605 (+) True G75498
TU111791 lncRNA downstream 32714 7398045 ~ 7399363 (+) True G75513
TU111792 lncRNA downstream 34097 7399428 ~ 7400033 (+) True G75514
TU111794 lncRNA downstream 36802 7402133 ~ 7408121 (+) True G75516
TU111772 lncRNA downstream 122144 7487475 ~ 7488567 (+) True G75502
XM_043251017.1 mRNA upstream 20789 7197537 ~ 7340195 (+) False LOC122353118
XM_043251035.1 mRNA upstream 20789 7197538 ~ 7340195 (+) False LOC122353118
XM_043250997.1 mRNA upstream 20789 7200446 ~ 7340195 (+) False LOC122353118
XM_043251023.1 mRNA upstream 20789 7200447 ~ 7340195 (+) False LOC122353118
XM_043251000.1 mRNA upstream 20789 7208597 ~ 7340195 (+) False LOC122353118
XM_043250087.1 mRNA downstream 15745 7381076 ~ 7386994 (+) True hrh2b
XM_043251170.1 mRNA downstream 85586 7450917 ~ 7483453 (+) True kcnip1b
XM_043251172.1 mRNA downstream 100739 7466070 ~ 7483453 (+) False kcnip1b
XM_043251171.1 mRNA downstream 107206 7472537 ~ 7483453 (+) False kcnip1b
XM_043250951.1 mRNA downstream 119071 7484402 ~ 7487356 (+) True npm1a
TU111640 other upstream 103755 7243267 ~ 7257229 (+) False LOC122353118
TU111639 other upstream 139456 7208535 ~ 7221528 (+) False LOC122353118
TU111651 other upstream 199721 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other upstream 199721 7153586 ~ 7161263 (+) False LOC122352414
TU111650 other upstream 210403 7142293 ~ 7150581 (+) True G75422
XR_006252001.1 other downstream 495915 7861246 ~ 7861379 (+) True LOC122353465
unassigned_transcript_1470 other downstream 496262 7861593 ~ 7861674 (+) True trnas-gcu_13
unassigned_transcript_1471 other downstream 496629 7861960 ~ 7862033 (+) True trnat-agu_2
XR_006252002.1 other downstream 498448 7863779 ~ 7863912 (+) True LOC122353466
XR_006251892.1 other downstream 507208 7872539 ~ 7879241 (+) False arrb2a

Expression Profile