RNA id: TU111791


Basic Information

Item Value
RNA id TU111791
length 1265
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G75513
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7398045 ~ 7399363 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTGTTCCTCTTCATCCCTGTGTTTGTACACTTTTAACTTGATTTTCTGATTGTCAATGGTAATGATGTGTTCGGCCTTTGAGAGCACGCTATCTCGGACTTAAACACAAACATTCAGACTTAATCAGATATGTCAAAACACTTAGAAAGGAACACAGTAATCTACTGTATATCATATTATGTGATATAAGCGAATGTTAATATAATGCAGTGATTAACTTTGGTTTGTTTAAATGGCTGATCTATTTATCCCAGATTTATTCATGTTTCAGAACatgaaataatgtgtgtgagatGAGAGGCATGTTCATCTTTGTCTGAAGGCAAAACTGTGCATCTTTACATGCAAggaaacataataataacacaacCAGAATGTGCTTGTTTACCGttcaaaacaacacattaaaaattgGCACATTAACACGGATGATGACACCATGAAATTTCATACGTTTTGTTTAAAGGCCTTTGGCCCCAACTGCTTTCCATAAAAGTGTTGCCTCTGAGTCATCGTTTACTTTGTTCTGGTGGCTCTTGAATGTTGAGAACTGTTCTGTCATTTCAAGAGAGAGATacaacagtgtatatatatatatatagtatatctAAGTGTGTAGGCctatgtttattatgtaaatattacgtaaatgcactttttaaatatctgtataaaaaatactataaaaatactttataccTGTATTTAAGGGGTTAAACAATACGTTTTACTTCATGTAACAATGACACATTGTGTTAtcattgtgtgtgtggatgtgtttttttgtttaatctaagggcagtttttttaaaataaccctaataaaactgttttgccacgtatgtttaatgtttacatcTATTCACCACATGTCCGCTGGCCTTGTTAGCCGGTTATTACAGGCCGATTTGAGCGTTAAGATTGATAGATTTTATAATTTAGCGACAGTTTGTCGAACTTTGTATTTCATCCTGAAATAGGCGTCAGGGAAGTTTGatcaaaattatgaaaaaaattgtcAACATAAGCTTTTGCGTCCAGCACTTACTGTCAGACGATTTGAACAGAATCTTAGCGGAGCTACTTCCGTCATCATATTGCACGACGCAGTCTCCTCCTTGAGATTTCTTCTTACTCTGGAAGTAAATCTGAAgtttatttttcacacttttagCGTGTTCAGGCCCCCAGTCTCCCTCTACAACGATGGGATAGCATTCGTCCATCGCGATCCTTCTGATCAACAAGGAAGTGACTTGCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111768 lncRNA upstream 31440 7365417 ~ 7366605 (+) True G75498
TU111609 lncRNA upstream 404837 6992839 ~ 6993208 (+) False trpc7a
TU111608 lncRNA upstream 412148 6981811 ~ 6985897 (+) False trpc7a
TU111573 lncRNA upstream 638400 6734932 ~ 6759645 (+) True G75371
TU111558 lncRNA upstream 742135 6644036 ~ 6655910 (+) False G75361
TU111792 lncRNA downstream 65 7399428 ~ 7400033 (+) True G75514
TU111794 lncRNA downstream 2770 7402133 ~ 7408121 (+) True G75516
TU111772 lncRNA downstream 88112 7487475 ~ 7488567 (+) True G75502
TU111884 lncRNA downstream 282791 7682154 ~ 7682440 (+) True G75574
TU111910 lncRNA downstream 406998 7806361 ~ 7834899 (+) True G75583
XM_043250087.1 mRNA upstream 11051 7381076 ~ 7386994 (+) True hrh2b
XM_043250847.1 mRNA upstream 26112 7362680 ~ 7371933 (+) True LOC122353014
XM_043250848.1 mRNA upstream 26112 7362680 ~ 7371933 (+) False LOC122353014
XM_043250849.1 mRNA upstream 26112 7362680 ~ 7371933 (+) False LOC122353014
XM_043250850.1 mRNA upstream 35507 7361078 ~ 7362538 (+) True cbln17
XM_043251170.1 mRNA downstream 51554 7450917 ~ 7483453 (+) True kcnip1b
XM_043251172.1 mRNA downstream 66707 7466070 ~ 7483453 (+) False kcnip1b
XM_043251171.1 mRNA downstream 73174 7472537 ~ 7483453 (+) False kcnip1b
XM_043250951.1 mRNA downstream 85039 7484402 ~ 7487356 (+) True npm1a
XM_043250684.1 mRNA downstream 133825 7533188 ~ 7538271 (+) True LOC122352927
TU111766 other upstream 32714 7360984 ~ 7365331 (+) True G75496
TU111640 other upstream 140816 7243267 ~ 7257229 (+) False LOC122353118
TU111639 other upstream 176517 7208535 ~ 7221528 (+) False LOC122353118
TU111651 other upstream 236782 7153586 ~ 7161263 (+) False LOC122352414
XR_006252001.1 other downstream 461883 7861246 ~ 7861379 (+) True LOC122353465
unassigned_transcript_1470 other downstream 462230 7861593 ~ 7861674 (+) True trnas-gcu_13
unassigned_transcript_1471 other downstream 462597 7861960 ~ 7862033 (+) True trnat-agu_2
XR_006252002.1 other downstream 464416 7863779 ~ 7863912 (+) True LOC122353466
XR_006251892.1 other downstream 473176 7872539 ~ 7879241 (+) False arrb2a

Expression Profile