RNA id: TU111872


Basic Information

Item Value
RNA id TU111872
length 1032
RNA type TUCP
GC content 0.39
exon number 4
gene id LOC122352929
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7524194 ~ 7528558 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCAGTATAAAGGCAAGATTGTGATCACAGATTTAGAAACAGCAGATACGTTGCCTTATGCTGGACCAGTCAACACACAGGGGTAAACATGTCGAATCAAATGGTAGTCATTCAGCCACAGCCTGTCATGATCTCTAGAGATTCTGATCAGTGGGGGTCTGGTATCTGTGACTGTTGCGACAATGTGCCTGAATGTTGCTTTGCTTACTGGTGTTTCTGGTGTTTCACGTGCATCAAAGCAAAGAAATATGGTGAATGTTTATGTCTCCCTCTCCTGGATTTATGTGGTTGCGTCCCACCCATAACCATGTCCATGAGGGTCTCGATGCGCCAGCGTTACGGCATTAGGGGAGACATGTGTAATGACTGCTTGTTGGCCACGTTCTGCAGAGCTTGCGTTTGGTGTCAGATGTCACGGGAGATGAAAGCAAGAAATCTACAGATCACTCTTGTTGGTGCCAGGAACCTGTAATTAGTTTTGAAGCGGCTGTGCTGTTGTGTGAAATGATAAGAATcgtaaaacactgaaaagcagatatatacactgttaaaaatgaaCACGCTTGAACGGTCCTTCGTcgcagaagaaccatttttggttccgcAGAGAACCTTTCAggcaaaggtttttttaaagaactatcTCTTCCTCGGGTTTTTTAGAATCTGAAAAGCCTTCTTTCGCCCACAAAGAAacttttgtgaaacaaaaaggTTCTTTCGAACGTTGAAGGTTCTTTATAAAACCATCTAGAcggaaaaaaattatgtaaaaaatgaaaggttcttctatgggaTTGTGAAGCACCATtatttaagtgtatatatatttattaatatctcATTAACGGAATATCATCGAACTGAATAATGTTATATTACACTTTTCGACTAAATGTGACGTCTGTGTTTTTGTATCTTTAATGTAAGTTACTCATTTTCTAATCAGCAGCATCAATATATCAATATCAGGGCTGTTGTGTCAATAGTGAATgtacttttctgtttttgatttatAAACTTCATTAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111847 lncRNA downstream 37676 7487473 ~ 7488567 (-) True G75549
TU111841 lncRNA downstream 39133 7486212 ~ 7487110 (-) False G75548
TU111843 lncRNA downstream 39133 7486212 ~ 7487110 (-) True G75548
TU111830 lncRNA downstream 74192 7450667 ~ 7452051 (-) True G75537
TU111821 lncRNA downstream 154325 7370932 ~ 7371918 (-) True G75533
TU111980 lncRNA upstream 80589 7609140 ~ 7616184 (-) True G75633
TU112005 lncRNA upstream 159143 7687694 ~ 7687973 (-) True G75654
TU112018 lncRNA upstream 232282 7760833 ~ 7761098 (-) True G75666
TU112019 lncRNA upstream 232974 7761525 ~ 7763853 (-) True G75667
TU112126 lncRNA upstream 568755 8097306 ~ 8099806 (-) True G75749
XM_043250681.1 mRNA downstream 3109 7519599 ~ 7523134 (-) False LOC122352925
XM_043250682.1 mRNA downstream 3757 7519599 ~ 7522486 (-) True LOC122352925
XM_043250683.1 mRNA downstream 7122 7514651 ~ 7519121 (-) True ponzr10
XM_043250680.1 mRNA downstream 12182 7511724 ~ 7514061 (-) True ugt5g2
XM_043250039.1 mRNA downstream 29905 7490561 ~ 7496338 (-) True tlx3b
XM_043250685.1 mRNA upstream 2594 7531145 ~ 7533022 (-) True LOC122352928
XM_043250744.1 mRNA upstream 10729 7539280 ~ 7544064 (-) True cldn7b
XM_043249877.1 mRNA upstream 21442 7549993 ~ 7588859 (-) True fgf11b
XM_043250816.1 mRNA upstream 153344 7681895 ~ 7686300 (-) False epob
XM_043250815.1 mRNA upstream 153344 7681895 ~ 7686300 (-) True epob
TU111694 other downstream 345422 7177324 ~ 7180821 (-) False G75454
TU111693 other downstream 345422 7177751 ~ 7180821 (-) True G75454
TU111553 other downstream 895086 6628425 ~ 6631157 (-) False sprn2
TU111552 other downstream 895086 6628430 ~ 6631157 (-) False sprn2
TU111527 other downstream 985317 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111870 other upstream 2310 7530861 ~ 7544090 (-) True G75562
unassigned_transcript_1468 other upstream 156091 7684642 ~ 7684723 (-) True trnal-uag_1
TU112043 other upstream 322470 7851021 ~ 7859708 (-) False vamp2
unassigned_transcript_1469 other upstream 331671 7860222 ~ 7860303 (-) True trnal-aag_32
unassigned_transcript_1472 other upstream 333734 7862285 ~ 7862366 (-) True trnal-uag_2

Expression Profile