RNA id: XM_043249958.1


Basic Information

Item Value
RNA id XM_043249958.1
length 2601
RNA type mRNA
GC content 0.36
exon number 4
gene id si:ch211-237l4.6
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7817810 ~ 7822518 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATCTTTATACTGCACGTGCCATTAAAAAAGACTAAGTCTATCCCTCACAGCCTTATTTTCATACATGATAAATTCAATATCGTGTCTAACCTAAGTTCTGTAAGATGATGAAAAAGGGTGGAACTATATTTTTAGAAACGAAATACTTATTGTGATGTTGTTCCTCTGTGtaatgtgtttgcattttatagtattttaatgatttttgtacatttctcacaagaaactatttgtttaaaatgttctcGTTACTGTACAAACACCTCTTACtacttataaaataaataaaacattcccaCTATAAAagtttaccatttttaaatggTCAAGCTATTTGGTCATTGTAGTGCAGCTGATACTCTCccattattattcattacacAATCATATACACTTTTCCCATGCACTgttgtaaaaaactaaaacaacacagaaactTTCTATACTTTCTGTAGACAGAAAGTGTTCTCGtaacttaataaaattaaagtggaaccactgatgtcacatggactatttcaACTATGTCCTACTGCACTTCTGGGCCTCGGATGTGGTAGTTGCATTAGGGTTAGAAAGTTCTCTGTTTTTATCAGAAataccttaatttgtgttctgaaatgaatgaatgtcttACACGTTTGGAACCACATGAGGgttagtaattaattaatcaggttttttgtttttggggtgaactatcccttcataagatcatcatttactcaccctcaagtcgtTCCAATCCTGtgaaaaaagatattttgaagaatgctgataatcaaacaatttttttgtctaACATGGTAgagtaaaaaaacactttggaGTGGAGACCATCAATTATTATGTGAGTTTCAACCACAGCAAAGATAAggcttttacaaaaaaaagcttcacAACAAGCAGAATTAGattactgttaaatattaaaatgtatttctcaaaataatattatttttaatgaatatcaTTTAacccaaatattttaatacacatgCTGTAATCTCAAACACAGGCTATTGTTGTGCtgcatgatttcatttaaaaaagataacaggatttataaaacacaaaatttatggaaagataaaatgaaaatttatctTGAAAAAATTGATGGAAATTTATTTCTGGTCATATCACATAGCTCTAATGTTAAATTTTAGCattaaatgtgcttaaaattaataaaaggttaaaagaaaaaaataaagattaaaaattgaATAATCAAAAGGTTTGTTTCAAATGGCATTTATGGAATAAAGcaggtttatttgtttttgagtgCAATGAATTAAGAAGCTCTGCTAAGACAgactaaaaaaaggaaaaatgtactCAGCCACTTCTGAGGTCAGGAGCTTTTGTTGTGGCTTGCAGGATTAGTTATTTAAAGCCTCAGCCGGTGGAAATTTCCCATGGCGTTCCGCGCACGCTCAATCAAAGCTTTAATACGCAACCGAGGTAACGGAACAGAAGGGCAGACGGTCAGTACAGCATCAGTATCCGCCGGGAATGCGACCATCACTGCCACAACACGATCTCTATAGGGACCAGCACGATCTCATGGAGCCAGAGCCTCAAACGCAGCAGATCCGACAGATCACCGGATAAGACACGCGGCGCCGCTTCGTTCCTCTACAGTGCCATCTGTTGAGGTGCAGCCTGGCTTCTCTCCGACGGTCTCCTGGGGTTATGACGGAGAAGAACGCGCTGCACGTCCCGTCTATTTTTCCCATAAAGCACGAGTAGTTTATCGCCACCAGATGGATGGCAATATTATCGACGCCACCTGCTGACCTTTGGGCTTCTTTCCCAGAATCCCTCGCCTTGTACCTGGCTGTAGACGTCCAGTGTAGAGAGGAGCGTTGTAGGAGTCTAGGCCGCTCCGTCCTGTGTAATTAAACTAAATCTTTCGTATTTAGTAAAGATGTCACAGTGTTTCCTCCATCCTCTCGCCATACCTGGCATTCACCTGTCTTGTACTTACTGtgttgaaatataatataacgttTCGAGGGAGACGGAGCGATGCAGGCCACACGGAGTGGACAAACAGGGACTGAGCTGGAttttatagatataaatatgaTATGCATCTTGTCATGCAAATCTGATCCTGGATGTATGATTGCCCGTTGTTTTTCAGAGGACAAAACACGACTGTTTTTTCAGAGGCTGATGAATGCATTTCaggcaaaaaatacattttgtactaATCAGTGGAATTACAATATCATTTatagtgtaataaaatgtatgtacatttagtAGTTATGATGATATATTTTGTTTCTGATGTTTATGTGCGGATCTATATTGGGTTAGGAAAAACTGCAAGTTTTAAAATGCTACCAAACTAAATAGtctgtttttatattctactgAAGCCCACAGAAATTACGAGATTGTTGTTTACTttgcataacatattttttctacaaaactatttttttaaattaagtccGAATTATGGCCCAGGCATGGTCTTTACAGTTCAATTTTGGCGTCTGGGGATATTCAGTCAGCCATAAAATACTgagtctatttaaaaaaacattaataaatacaaaatgataataatattattttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111884 lncRNA upstream 135370 7682154 ~ 7682440 (+) True G75574
TU111772 lncRNA upstream 329243 7487475 ~ 7488567 (+) True G75502
TU111794 lncRNA upstream 409689 7402133 ~ 7408121 (+) True G75516
TU111792 lncRNA upstream 417777 7399428 ~ 7400033 (+) True G75514
TU111791 lncRNA upstream 418447 7398045 ~ 7399363 (+) True G75513
TU111922 lncRNA downstream 18261 7840598 ~ 7859712 (+) True G75591
TU111925 lncRNA downstream 22882 7845219 ~ 7849236 (+) True G75593
TU111946 lncRNA downstream 78886 7901223 ~ 7902731 (+) True G75607
TU111975 lncRNA downstream 213797 8036134 ~ 8069911 (+) True G75629
TU112150 lncRNA downstream 343111 8165448 ~ 8165704 (+) True G75766
XM_043249980.1 mRNA upstream 109 7812206 ~ 7817701 (+) True tmem88a
XM_043250346.1 mRNA upstream 7727 7786664 ~ 7810083 (+) False kdm6bb
XM_043249932.1 mRNA downstream 43998 7866335 ~ 7871448 (+) False ap4m1
XM_043249931.1 mRNA downstream 44001 7866338 ~ 7871448 (+) True ap4m1
XM_043250066.1 mRNA downstream 50202 7872539 ~ 7880100 (+) True arrb2a
XM_043250067.1 mRNA downstream 50202 7872539 ~ 7880100 (+) False arrb2a
XM_043250069.1 mRNA downstream 50202 7872539 ~ 7878636 (+) False arrb2a
TU111766 other upstream 452479 7360984 ~ 7365331 (+) True G75496
TU111640 other upstream 560581 7243267 ~ 7257229 (+) False LOC122353118
TU111639 other upstream 596282 7208535 ~ 7221528 (+) False LOC122353118
TU111651 other upstream 656547 7153586 ~ 7161263 (+) False LOC122352414
XR_006252001.1 other downstream 38909 7861246 ~ 7861379 (+) True LOC122353465
unassigned_transcript_1470 other downstream 39256 7861593 ~ 7861674 (+) True trnas-gcu_13
unassigned_transcript_1471 other downstream 39623 7861960 ~ 7862033 (+) True trnat-agu_2
XR_006252002.1 other downstream 41442 7863779 ~ 7863912 (+) True LOC122353466
XR_006251892.1 other downstream 50202 7872539 ~ 7879241 (+) False arrb2a

Expression Profile