RNA id: TU112005


Basic Information

Item Value
RNA id TU112005
length 280
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G75654
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7687694 ~ 7687973 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTATAGGcctataatttaaataatattttgaggaTATTTAAGAAGATTGTGTACATTTGTCCCACTGTCCACTGTCTATAATTGCTTTcactttaatattaaacatcCTATATAAGCATAGTTTAATTGAGACAGACTTGTTAAGTAATTCACTGATACAATATTCATTTTGGGTTGTGATAAAGATGtgtgtcaaaacaaaacaaagaaaaaagaaaagctgtcAGTCTGTTTCAATCTATATTTATGGGattcttgttttattgtttttaataaac

Function

GO:

id name namespace
GO:0042594 response to starvation biological_process
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111980 lncRNA downstream 71510 7609140 ~ 7616184 (-) True G75633
TU111847 lncRNA downstream 199127 7487473 ~ 7488567 (-) True G75549
TU111841 lncRNA downstream 200584 7486212 ~ 7487110 (-) False G75548
TU111843 lncRNA downstream 200584 7486212 ~ 7487110 (-) True G75548
TU111830 lncRNA downstream 235643 7450667 ~ 7452051 (-) True G75537
TU112018 lncRNA upstream 72860 7760833 ~ 7761098 (-) True G75666
TU112019 lncRNA upstream 73552 7761525 ~ 7763853 (-) True G75667
TU112126 lncRNA upstream 409333 8097306 ~ 8099806 (-) True G75749
TU112151 lncRNA upstream 477475 8165448 ~ 8165708 (-) True G75767
TU112289 lncRNA upstream 526689 8214662 ~ 8221865 (-) True G75868
XM_043250816.1 mRNA downstream 1394 7681895 ~ 7686300 (-) False epob
XM_043250815.1 mRNA downstream 1394 7681895 ~ 7686300 (-) True epob
XM_043249877.1 mRNA downstream 98835 7549993 ~ 7588859 (-) True fgf11b
XM_043250744.1 mRNA downstream 143630 7539280 ~ 7544064 (-) True cldn7b
XM_043250685.1 mRNA downstream 154672 7531145 ~ 7533022 (-) True LOC122352928
XM_043250846.1 mRNA upstream 168 7688141 ~ 7689495 (-) True LOC122353013
XM_043250838.1 mRNA upstream 4873 7692846 ~ 7694916 (-) True zgc:172339
XM_043251167.1 mRNA upstream 135436 7823409 ~ 7829584 (-) True pcolcea
XM_043250289.1 mRNA upstream 145136 7833109 ~ 7849187 (-) False per1a
XM_043250287.1 mRNA upstream 145136 7833109 ~ 7849187 (-) False per1a
unassigned_transcript_1468 other downstream 2971 7684642 ~ 7684723 (-) True trnal-uag_1
TU111870 other downstream 143604 7530861 ~ 7544090 (-) True G75562
TU111872 other downstream 159143 7526243 ~ 7528551 (-) False LOC122352929
TU111694 other downstream 506873 7177324 ~ 7180821 (-) False G75454
TU111693 other downstream 506873 7177751 ~ 7180821 (-) True G75454
TU112043 other upstream 163048 7851021 ~ 7859708 (-) False vamp2
unassigned_transcript_1469 other upstream 172249 7860222 ~ 7860303 (-) True trnal-aag_32
unassigned_transcript_1472 other upstream 174312 7862285 ~ 7862366 (-) True trnal-uag_2
TU112044 other upstream 195933 7883906 ~ 7885482 (-) False rnasekb
TU112284 other upstream 485376 8173349 ~ 8285918 (-) False G75863

Expression Profile