RNA id: TU112289


Basic Information

Item Value
RNA id TU112289
length 380
lncRNA type intronic
GC content 0.29
exon number 2
gene id G75868
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 8214662 ~ 8221865 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ccttccttttgtgtttttattgtcacaacACCGTAAGAgctaaagtagaaaaataaacaatatagaatctacaatgaattcacattcatataaatgaaacaaagtaattactcaaaactgcacaattaatactaacaattaacttAAACTACGTAAAGGTGctcaaatttaataaagcaaacacataaaacacaatacaacatGTAATTTACGTATATATTAGTGAAATGCTCTACCTTGTTCTCCCTTTCAACCAGgtgttaaaatatcaaagttaaaataaaacaaaacgatgctaatttcctttttacttttttaaagtgtccttaattatttatgttaactTTGTCCCGTCTCCGTTTCTGTACGCGTGCTCTCCT

Function

GO:

id name namespace
GO:0051156 glucose 6-phosphate metabolic process biological_process
GO:0006098 pentose-phosphate shunt biological_process
GO:0006739 NADP metabolic process biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0019682 glyceraldehyde-3-phosphate metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112151 lncRNA downstream 48954 8165448 ~ 8165708 (-) True G75767
TU112126 lncRNA downstream 114856 8097306 ~ 8099806 (-) True G75749
TU112019 lncRNA downstream 450809 7761525 ~ 7763853 (-) True G75667
TU112018 lncRNA downstream 453564 7760833 ~ 7761098 (-) True G75666
TU112005 lncRNA downstream 526689 7687694 ~ 7687973 (-) True G75654
TU112294 lncRNA upstream 8823 8230688 ~ 8260267 (-) True G75871
TU112321 lncRNA upstream 97056 8318921 ~ 8320460 (-) False unc13bb
TU112378 lncRNA upstream 325630 8547495 ~ 8556088 (-) True G75913
TU112422 lncRNA upstream 638789 8860654 ~ 9032179 (-) False cadm2a
XR_006251937.1 lncRNA upstream 665139 8887004 ~ 8887358 (-) True LOC122352914
XM_043250165.1 mRNA downstream 257792 7951790 ~ 7956870 (-) False nle1
XM_043250163.1 mRNA downstream 257821 7951790 ~ 7956841 (-) False nle1
XM_043250162.1 mRNA downstream 257825 7951790 ~ 7956837 (-) True nle1
XM_043250164.1 mRNA downstream 257841 7951790 ~ 7956821 (-) False nle1
XM_043249889.1 mRNA downstream 304477 7905106 ~ 7910185 (-) True LOC122352483
XM_043250648.1 mRNA upstream 57117 8278982 ~ 8290533 (-) True si:dkey-106l3.7
XM_043250646.1 mRNA upstream 62784 8284649 ~ 8290526 (-) False si:dkey-106l3.7
XM_043250647.1 mRNA upstream 62784 8284649 ~ 8290521 (-) False si:dkey-106l3.7
XM_043250621.1 mRNA upstream 73100 8294965 ~ 8302628 (-) False LOC122352881
XM_043250620.1 mRNA upstream 73100 8294965 ~ 8302628 (-) True LOC122352881
TU112044 other downstream 329180 7883906 ~ 7885482 (-) False rnasekb
unassigned_transcript_1472 other downstream 352296 7862285 ~ 7862366 (-) True trnal-uag_2
unassigned_transcript_1469 other downstream 354359 7860222 ~ 7860303 (-) True trnal-aag_32
TU112043 other downstream 354954 7851021 ~ 7859708 (-) False vamp2
unassigned_transcript_1468 other downstream 529939 7684642 ~ 7684723 (-) True trnal-uag_1
XR_006252003.1 other upstream 53394 8275259 ~ 8275391 (-) True LOC122353467
XR_006251936.1 other upstream 297801 8519666 ~ 8527447 (-) False smtna
XR_006251935.1 other upstream 298816 8520681 ~ 8527446 (-) False smtna
TU112375 other upstream 321232 8543097 ~ 8546152 (-) False G75913
TU112377 other upstream 323502 8545367 ~ 8556088 (-) False G75913

Expression Profile