RNA id: TU112807


Basic Information

Item Value
RNA id TU112807
length 1135
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G76233
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 9823035 ~ 9824169 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCACATCCGGCCCTTTGTACGTTGGTTTCCGCCCGCGCGAGGTCAAATATAATtatcataaattaaacaattttttaaaacttttattttgaaaagcgtTACGTCACTAATTAAACGAACGTATGCACGTAAGTGGGTGACGGTTAACAACTACAAATGATACAAGACGGTTAACCCTCAAGATATCGGCTAAcgctaagaaaagaaaagttgacAAAGAATGccgtatttttaacaaaaaatggactgtcaaatatttctgtacagAAGTTAAAGGTAAAGCAGTGTGCTTAATCTGTGGTACACAGATTGCTGTGTTTAAAGAGTATAATTTGAATCTCCATTACACGACCAAGCAtgaagataaatacaaaaatctgtccGATGAAGAGCGTGCAAGGGAGTCTGATGCATTGCTTGCAAAACTACAAACCCAacaggaattttttttactaaacttcCCGCTGCCAGAGATGCAGCCGTCAGGACAAGTTATgtaatttcttacaaaatcGCCCAAAAAAAGTAAGTCGTTTTCCGATGGAGAGTTAAAGGAATGTTTATTGGACTCTGCTGCGCTGATATGCCCGGAGAAAAGGGGCGCATTTGAGAGCGTTTCACTCTCCCGACGCACTGTAACGAGGTGGATAGAGGACATCGCTGGAAACTTAGAGCTTCAGCTGAGGAACAGAGCGTctgactttgactttttttctctggcTTTGGACGAGAGCTGCGATGTACGTGACACCGCCCAGCTCCTCATCTTCTTACGTGGAGTAActtcagactttcaaatcacaggGGAGGTGGCAGCCATGCAGTCAATAAAAGGCACAACTACTGGTAATGATTCATTTAGAgaggtaaatgcatgtttgaacattttaggtttgaaatgaGACAAGCTTGCAGGTGTGACAACACCAGATCCAGAGTTTTGTCCAAATCTGACAGGGAAAAATGTTGGACTTTTAAAGAGAATGCAGGATAAAGTCACAGAAATTAACCCTGTTcagaaattgacatttttgcattgtatcaTACATCAGGAAGTGTTGTGTAAGacagtgttaaaaatgaaacatgtagTTGATGCTGTCAGTAAAACAGTTAACTTCATCAGAGCAAGgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251940.1 lncRNA downstream 59544 9761809 ~ 9763491 (-) True LOC122352923
TU112803 lncRNA downstream 105622 9717033 ~ 9717413 (-) True G76229
TU112794 lncRNA downstream 112327 9702688 ~ 9710708 (-) True G76225
TU112798 lncRNA downstream 112327 9702688 ~ 9710708 (-) False G76225
TU112799 lncRNA downstream 116542 9701992 ~ 9706493 (-) False G76225
TU112929 lncRNA upstream 199326 10023495 ~ 10023701 (-) True G76324
TU112932 lncRNA upstream 274096 10098265 ~ 10106179 (-) True G76327
TU113040 lncRNA upstream 359925 10184094 ~ 10184522 (-) True G76388
TU113066 lncRNA upstream 417790 10241959 ~ 10242182 (-) True G76413
TU113074 lncRNA upstream 428856 10253025 ~ 10253861 (-) True G76421
XM_043250664.1 mRNA downstream 2454 9764326 ~ 9820581 (-) False tiam1a
XM_043250665.1 mRNA downstream 13159 9764326 ~ 9809876 (-) False tiam1a
XM_043250666.1 mRNA downstream 13159 9764326 ~ 9809876 (-) False tiam1a
XM_043250663.1 mRNA downstream 13159 9764326 ~ 9809876 (-) False tiam1a
XM_043250662.1 mRNA downstream 13159 9764326 ~ 9809876 (-) True tiam1a
XM_043251148.1 mRNA upstream 2921 9827090 ~ 9829492 (-) True sod1
XM_043250853.1 mRNA upstream 6031 9830200 ~ 9840399 (-) True scaf4a
XM_043250834.1 mRNA upstream 41451 9865620 ~ 9885047 (-) True postna
XM_043250835.1 mRNA upstream 64187 9888356 ~ 9900172 (-) False trpc4a
XM_043250836.1 mRNA upstream 64187 9888356 ~ 9900172 (-) True trpc4a
XR_006251964.1 other downstream 197630 9589980 ~ 9625405 (-) False LOC122353179
TU112582 other downstream 393235 9427962 ~ 9429800 (-) True G76068
TU112377 other downstream 1266947 8545367 ~ 8556088 (-) False G75913
TU112375 other downstream 1276883 8543097 ~ 8546152 (-) False G75913
XR_006251935.1 other downstream 1295589 8520681 ~ 8527446 (-) False smtna
TU113078 other upstream 443185 10267354 ~ 10277701 (-) True fgf13b
TU113101 other upstream 555927 10380096 ~ 10383309 (-) True G76438
TU113102 other upstream 555927 10380096 ~ 10381047 (-) False G76438
TU113103 other upstream 555927 10380096 ~ 10383309 (-) False G76438
TU113196 other upstream 653890 10478059 ~ 10480189 (-) True G76498

Expression Profile