RNA id: TU113433


Basic Information

Item Value
RNA id TU113433
length 1732
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G76657
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11218169 ~ 11290840 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGATGTTAATACTGGCTtttataaaacgttttttttctccacaagaACAGATCACAGGTTACCAACATtactgaaagaagaaaataataatctccaagaaaacttttaataaagtataaattaatTGCACACATCACTGGTTTTAAATGATCCACAAGGCATTTCCAACAAACTAAAATCTCTCGTAAAAAGAAGAGGGGAAATGAACAGAAAGCGTCCCCCTTGTGAACCTGTCGAAGGCCACGTCCTCTTCCGCTGGAGGGTCCACTCAGTTCTCAGACTTTCAAGTGTAAGATGGAGAGCGAGACCAGTGCAAAAATGAAGTTTCAAGTTCAAGAGAAAACCTGATCGGGAGGAATGACAAACAGCCAGTGGGGGAAGAAGGAAAAAGTGGTCCAGCTTCACAGAACTCCAAAAAGGCCTTGAATGAAGAAGTTGCTGGAGTTTTCTTCGGTTTCTGGGCATCACTATACGacaaaccattaaaaatgattCGTCTATGATATTCTGCATCTTTTCGTTTTGTTTGCCAGGCGCTTATACAAACGGTGCATGTCcagttcttttttctttttttttttttttttgcatatcgCGTCAGTGCAAGTGGGCTGAGGGTAACTGAAAAAAGGGAAGGGGAAGGTTTAAGTGGCTTCTGCACTgcactaattttaaaataaatacggAACCGATGCATTCAAAGGGGGCATTCGGGTTTGTCTTATTTCACGAGTTGACAGGCCCTATTTACAGAAGACGAAACAACCATATTAGCCCTTGCTTGCGAACGCTGGAATGCACGCAGTTGTCAAAGGCGTCCGTTAGGAGTTGATAAAAAGCAGCTAAACTGAAAAAGCTGACAGAAGGAGAACTGTGAACCTGATACTCGATGTCCGTCTCTCTTTCTGCCTCAAACGATCTGATCTGGTTTGTCGTGTTCACGGGCGAATTAATGAGATAAAAGGAGAACGGTTACAGCGAGAGCCATTACTGTAAAATTCATGATACCCGAGAGGCCAGGAAGGAGCGGCTGGACGTgggtaatatatgtgtgtggggCAGCAGCAGTGGCAGGAAAGGCAGACGCTGACAACACAAACAGGAGCGTTCAGAGCTGCTTTCATTTCCGTCCAGCCAATCTGAGGGAAGTACAAACGTCAGGACGCAGCAAATCCACTCTAAAATGTGGATGGACACCTccatacatgaaaaaaaaaaaaaaaaaaaaagaatttcggGTTCTCTCTTGTACGTCCCGAGCTGTAACGACGATGACCTGAGCGCTGCAGATAAGCCACGTCACTGTAAACACAAGGCTTTGTATTTTTCACAGGATCCCGTTGTTACAAACGCAACACTCCACTTAGGCTCCTTTTGGCGGAAAAGCGCACATTTTCGTCTCATTCGCTGTATGTGCTAAACGAAAGCAAGCAGAAGTCAGCCTGCGGTTTGTACGCTCAGAGACGCTCGTAGTTATAGTTTGAAATGACTTGGGCGCAGGCTACAGGCCCTGTCTGGGGGCGACTAACGCAAACTCTCGCAAAATGTTCCGTGCCACGTCCACCTTGTTCTGCGCGATCATCAGCGCTCGTTTCACGTCTTCGAACGAGTAGCCCTCCCCCATCAGCTTGGCGATCTTGGCGTCGACGTTCTCCCGGGACGATTCGTGCGGTCTTCTGTGGATGTCTGGTGGGATGATCCTGGGAAGTGGTTTCGGAGTGCTTTCCATTTG

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113412 lncRNA downstream 107334 11096963 ~ 11110835 (-) True G76642
TU113395 lncRNA downstream 127108 11087586 ~ 11091061 (-) True G76627
XR_006251883.1 lncRNA downstream 173316 11026069 ~ 11044853 (-) True LOC122352521
XR_006251882.1 lncRNA downstream 179369 11035692 ~ 11038800 (-) True LOC122352520
TU113402 lncRNA downstream 223743 10994218 ~ 10994426 (-) True G76632
TU113502 lncRNA upstream 195066 11485906 ~ 11486428 (-) True G76693
TU113507 lncRNA upstream 214470 11505310 ~ 11584960 (-) False ccdc83
TU113584 lncRNA upstream 411031 11701871 ~ 11766210 (-) False G76755
TU113585 lncRNA upstream 470877 11761717 ~ 11766210 (-) False G76755
TU113586 lncRNA upstream 470877 11761717 ~ 11766210 (-) False G76755
XM_043250270.1 mRNA downstream 12943 11182738 ~ 11205226 (-) False LOC122352715
XM_043250272.1 mRNA downstream 45855 11168125 ~ 11172314 (-) True LOC122352716
XM_043250273.1 mRNA downstream 45855 11168126 ~ 11172314 (-) False LOC122352716
XM_043249972.1 mRNA downstream 59435 11151111 ~ 11158734 (-) True LOC122352533
XM_043249948.1 mRNA downstream 68337 11145385 ~ 11149832 (-) True btg3
XM_043251131.1 mRNA upstream 58 11290898 ~ 11350637 (-) False alcama
XM_043251130.1 mRNA upstream 58 11290898 ~ 11350637 (-) True alcama
XM_043250117.1 mRNA upstream 161783 11452623 ~ 11457502 (-) True si:ch211-103f14.3
XM_043250856.1 mRNA upstream 167993 11458833 ~ 11466838 (-) True zpld1a
XM_043250114.1 mRNA upstream 215361 11506201 ~ 11510464 (-) True ccdc83
XR_006251915.1 other downstream 10917 11176569 ~ 11207252 (-) False LOC122352715
XR_006251918.1 other downstream 12942 11176569 ~ 11205227 (-) False LOC122352715
XR_006251917.1 other downstream 12943 11176569 ~ 11205226 (-) False LOC122352715
XR_006251916.1 other downstream 12943 11176569 ~ 11205226 (-) False LOC122352715
XR_006251914.1 other downstream 12943 11176569 ~ 11205226 (-) False LOC122352715
TU113815 other upstream 1491513 12782353 ~ 12789090 (-) True mogat2
XR_006251934.1 other upstream 2247889 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 2352451 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 2515279 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 2911422 14202262 ~ 14204127 (-) True G77440

Expression Profile