RNA id: XM_043250114.1


Basic Information

Item Value
RNA id XM_043250114.1
length 1891
RNA type mRNA
GC content 0.43
exon number 10
gene id ccdc83
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11505310 ~ 11584960 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGTCGCCCCCCTGTTTAGTTTCCTTGACAACGTGTAAACAAATCcggaaaaataaaagaaaattcataGAGCTCAAAGGAAAAATGAGCAAGACATTAAATACATCTCTGCCAGAGGCCTTCATACAGTTCCAAATTCAGCTTAAAAAGGAAGAGATTCAATATTTTGAGGAAGAAATACGCCAACTAGAAGATAAGAGGAAAAAACTCACAAAGCTGGCAAGTATCAACATTACGTTTGCGAAGATGAAGGGAAGACTAAACTCAAACGCGTGTCTGCAGCAGGAGCAGCTGAGAGAAGAGCACAGAGGTCATGTGCGTGAACTGCAGAAAAAGATGAAGGAGCAGGAGAGGAACCTGGAGCAAAGGCAGCGAGATGATGAAGAGCAGGTGGAGAACATGGCCCGGGAGGATCGGGAGCTAAAACACAAGCAAGAGGAAGAACTAGAAGAACTGCGGTGTGAGCTTGCAAGGCTGCGGGTGCAAGTGAAGGAACTGCAGGAGAAACAGCAGACATGGCTTCAGTATAAGAATGAGGACAGCATTAAAGACCGGCAAAAGATACAGAAACTGGAAAAAGACATTGCCTTAACAAAAAGGACTTTTCAGGAGATATCAGGATATTTTCAGAGGTCTCTGGTTGCGGCCGTTaatgaaaatgagcaaaaagtAGCACAGAGTTTAAAGGAAGGCATTCAGCTCGCCTTTGAGAGAGCATACAGAAACCTTAACCAGAATAGACTAGAGAATAAAAGCAACTGGCTAAAAAAAGAGGTTCGCCTATATACCGAGAAAGTTGCAGTGCTGGAATCCTCTGTCCAGAAGTTGGAAGAGGAGATCTTGGATCTTGTTTCCCTCAGCCCAGGCAGTGAGTTTCTTGCACAATCTGCTTGCCTTGGGTCCCATGGCACTCACAATATGGACAGGGACATAATGAAAATAAGCCCTGAGGAAACATCAGAGCTGGTCAACAGACCCTGGTGTCCCCTCCAACCATTAACAGAAGTGAAAGGGGCTCAGCAGAACAGCAAAGCGACCACAACAACTTCCGTCCCTCCTGACTTGAGCGAAATGTTCAGAGGTCAGACCGATTTAATGGGGCCGACGCATCTGGGCTCGCTGGAGCAGAAGCTGCTGTGGGTGATTGGTAAAGCATACCCCCTGCACCCACCTCCAAATGACCCCGTGGATATGGGAGAGgagatgacctttgacctgatGCAAAATGAAAAGTGGCCAGTTACAACAGGTCTAATACTTAGCAAGTTTAAACGGGCAAGTTCACAGTCTGGAGAAGCTGACAAATCCACAGACGACACCTGTGATATTTAGCAGTtggattaaaaattaaaacgcaAATGGTGAATAATTCCTATACACTGATAGCTTCATGCAGGCATAATTCTGTAAATGACAACTGTGAAATTCAGCAAACAATTTAAGCACTCCAAAAatttataaacaattatattaaattaagttatgCATCATGTCTatgtgatttgttttatatatacacatacatacatacatacatacatacacaccaaaaataacaaacacttAGTTCTGTGGAAGCTGCACTTTATTTGAAAATCACCCAAATTctgcttcatttttttgtcatataaacaaaatataatctGCAGGGATGATGCAGTAAATATGCTAAATCAATGGATAGAATCGCCCTCATATTCGGACCACCTTTTGTGTACTTCCCTATTGGACAGGGCCTGTTTATGTACACAGGGCACTGATCAACAGCGCCCCCTTTTGTCACTTTATTGGACAGCTAGACACTACCGACCCCATCCCGATACTGACAGCAACCTGCGTTTCTTCCTCACATtcacattctctcacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113502 lncRNA downstream 19773 11485906 ~ 11486428 (-) True G76693
TU113433 lncRNA downstream 215361 11218169 ~ 11290840 (-) True G76657
TU113438 lncRNA downstream 270511 11234372 ~ 11235690 (-) True G76662
TU113412 lncRNA downstream 395366 11096963 ~ 11110835 (-) True G76642
TU113395 lncRNA downstream 415140 11087586 ~ 11091061 (-) True G76627
TU113584 lncRNA upstream 191407 11701871 ~ 11766210 (-) False G76755
TU113585 lncRNA upstream 251253 11761717 ~ 11766210 (-) False G76755
TU113586 lncRNA upstream 251253 11761717 ~ 11766210 (-) False G76755
TU113587 lncRNA upstream 251253 11761717 ~ 11766210 (-) True G76755
TU113588 lncRNA upstream 251253 11761717 ~ 11766210 (-) False G76755
XM_043250856.1 mRNA downstream 39363 11458833 ~ 11466838 (-) True zpld1a
XM_043250117.1 mRNA downstream 48699 11452623 ~ 11457502 (-) True si:ch211-103f14.3
XM_043251131.1 mRNA downstream 155564 11290898 ~ 11350637 (-) False alcama
XM_043251130.1 mRNA downstream 155564 11290898 ~ 11350637 (-) True alcama
XM_043250270.1 mRNA downstream 300975 11182738 ~ 11205226 (-) False LOC122352715
XM_043250948.1 mRNA upstream 20373 11530837 ~ 11533005 (-) True tmem126a
XM_043250947.1 mRNA upstream 20373 11530837 ~ 11532486 (-) False tmem126a
XM_043249836.1 mRNA upstream 198967 11709431 ~ 11711598 (-) True ift46
XM_043250759.1 mRNA upstream 203436 11713900 ~ 11719645 (-) True vps11
XM_043250890.1 mRNA upstream 220659 11731123 ~ 11744558 (-) True si:ch73-261i21.5
XR_006251915.1 other downstream 298949 11176569 ~ 11207252 (-) False LOC122352715
XR_006251918.1 other downstream 300974 11176569 ~ 11205227 (-) False LOC122352715
XR_006251917.1 other downstream 300975 11176569 ~ 11205226 (-) False LOC122352715
XR_006251916.1 other downstream 300975 11176569 ~ 11205226 (-) False LOC122352715
XR_006251914.1 other downstream 300975 11176569 ~ 11205226 (-) False LOC122352715
TU113815 other upstream 1271889 12782353 ~ 12789090 (-) True mogat2
XR_006251934.1 other upstream 2028265 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 2132827 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 2295655 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 2691798 14202262 ~ 14204127 (-) True G77440

Expression Profile