RNA id: TU113585


Basic Information

Item Value
RNA id TU113585
length 3589
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G76755
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11701871 ~ 11766210 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTGGGAATTAGTcaccattttattcatttaaagcattgAGGCAGTTGGAAAAGGCTTCTGAATCTCACATTTCACAAGCCGATAAATAGGTTGTGCAATCTAGGTAGAAAAATCTGTTCCCTGTGATCTGGAAATGTGATCCCTTaatccccttttttttttaattgcaacaaTCTCTCTGTAAGTTGAAGTCATCCAAAACTTTAGAAAGAATTTTAGACAAGTCCAACTACAGAGGGCAACAGTAAACATTGCTATGGAGGTAGCAGTGGCTTTGGAATGGCTTAGTCGACCTCCTCAATGGTTGGGCCGGAGGATCCACCTCCTGGTGCAGAGCCAGCTCCTGGGAAACCACCGGGCATACCATCAGGCATTCCACCTGGCATGCCTCCAGCACTCTGGTACAGCTTGGTGATGATGGGGTTGCATACCTTCTCCAGCTCCTTCTGCTGGTGCTCAAACTCTTCCCTCTCGGCAGTCTGAAAGCAGAAATAAGGATTAAGTCACTCTGAATCaagtgctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacacctttctATGATGGCAGGCTTACCTGGTTCTTGTCAAGCCAACTGATGACTTCATTGCACTTGTCAAGGATCTTCTGCTTGTCCTCATCACTGATCTTGCCCTTTAGTTTCTCATCCTCAACAGTGGACTTCATGTTGAAGGCATAGGACTCCAGACCATTCTTGGCAGAAACCTTATCGCGTTGGACATCATCCTCAGCCTTGTACTTCTCTGCCTCTTGCACCATGCGCTCGATGTCCTCCTTGCTGAGGCGACCTGAAAGAGACTTCCAGTTAACCTCTGAAGGGGCTGCCACAAAAGCCATCAAATATTTAGAGGACAGACTTACCCTTATCGTTGGTGATTGTGATTTTGTTCTCCTTGCCAGTGCTCTTATCAACAGCAGAAACATTCATGATGCCGTTAGCATCAATGTCAAAGGTGACCTCAATCTGGGGAACGCCACGGGGTGCAGGGGGGATTCCAGTAAGTTCAAACTTGCCCAGCAAGTTGTTATCCTTGGTCATAGCACGCTCACCCTCATAGACCTAAGAACGTAATAACAGTGTAGTTAAACATCTAGGAGACCTTGGGTGGGATATAAAACTAATCCCCTAACAGAACTACTTGGTACCCACCTGAATAAGCACACCAGGCTGGTTGTCAGAATAGGTGGTGAACGTCTGAGTCTGTTTGGTTGGGATGGTGGTGTTGCGCTTAATTAGGACAGTCATGACTCCACCAGCTGTCTCAATTCCAAGGGAAAGAGGAGTGACATCTAGCAGCAGCAAGTCCTGAACATTCTCGGACTTGTCACCAGAGAGGATGGCAGCCTGGACAGCTGAAACAGAAGATTGAGAAATAAGAACCTTTGGAAACTTGAGATGGCCAGATAGCCATTATAGTAGTCGCTCAGACATCCAAGGAAGATGGGCCATCTTTGGTTTTTCAACCTCTAGTGGAAACTACGAATGTTTTGGTATCAACTTCATCACAGCGAACGACAAGCCACAGAAACAAAGACAGTCACCCACCTGCTCCATAGGCAACAGCCTCATCGGGGTTGATGCTCTTATTGAGCTCCTTGCCGTTGAAGTAGTCTTGGAGAAGCTTTTGGATTTTGGGAATACGAGTGGAGCCACCAACCAGGACAATGTCATGGATCTGAGCCTTGTCCATCTTGGCGTCACGAAGGGACTTCTCGACTGGGTCCAAGGTGCCACGGAAGAGGTCAGCGTTGAGCTCCTCAAAACGGGCCCTGGTGATTGAGGTATAGAAATCGATACCCTCATAGAGGGAGTCGATCTCAATACTGGCCTGAGTGCTGGAGGACAGGGTACGCTTGGCCCTCTCGCAGGCGGTGCGGAGGCGGCGAACGGCTCTCTTGTTGTCGCTGATGTCCTTCTTGTGTTTGCGCTTGAACTCTGTAATGAAGTGGTTCACCATGCGGTTGTCGAAGTCTTCTCCACCCAAGTGAGTGTCTCCAGCAGTAGATTTGACCTCAAAGATGCCATCCTCAATGGTGAGGATAGACACGTCAAAAGTACCACCACCAAGATCAAAGATGAGGACGTTCCTCTCAGCACCAACCTGAAAAATAggttaaaaaatttaaattaaggaaaaaacaacaactttgcaATCTGCATTTATGGCCACTCAGTTTCGCTCAGACATCCAAGGAAGATGGGCCGTCTTTGGTTTTTCAACCTCTAGTGGAAACTACGAATGTATTGGTATCATCTTCATCACAGCGAAAGCAAGAGAAAAACGACAACTACAAATGCAAGTTTTTCTAACCTTTTTGTCCAGACCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATTATACGCAGAACATTCAAGCCAGAGATGGTTCCAGCATCCTTGGTAGCCTGTCTCTGAGAATCGTTGAAGTAAGCAGGCACAGTGATGACAGCATTGGAAACAGTCTGTAGAAGGAAAAAATGCCAGTTAGACAAACTATCACTTGGAGCTAAAGGGAACAATACAACATGTGCAAGTCGCTCAGACATCCAAGGAAGATAGGCCATCTTTGGTTTTTCAACCTCTAGTGGAAACTACGAATGTATTGGTATCAACTTCATCACAGCGAAACATCAACTCAAGTGGAGTGCAACAGAGCAACCCCATAAAACGGAGCTCTCACCTTTCCCAAGTAGGCCTCAGCAATTTCCTTCATCTTGGTGAGAACCATGGAGGAAATCTCTTCAGGGTAGAAAGACTTAGTCTCACCCTTGTATTCAACCTGGACCTTGGGGCGGGAATTGTCATTGATGACATTAAAAGGCCAGTGCTTCATGTCAGACTGAACAACGCCATCATCAAACCTGCGGCCAATCAGGCGCTTGGCATCTGTTGGAGACCAAAGACTGTGTTAGTGGGGTTCATGGCGACCTGGTTTTTTGCTGCATCTCCAATCAATCTCTCAGTATCTGTGAAAGCTACATAGCTTGGAGTGGTTCGGTTTCCTTGGTCATTAGCGATAATTTCTACTTTCCCATGTTGGAAAACACCTACACAGGAGTAGGTGGTCCCGAGATCAATACCAACAGCTGGTCCcttggacattgtCAAGCTGGAAATAACCGAGATGAGTGAAGATGCCGGTCGGAGAGCTGGAATGGCGACAAACTGCCTCGCCTTGCTTACAAGAGAGAACGATCGAATGTTCTAGAACACTATATATTGCCGGTAGCTGAGCCAATGACATTTCAGATGACTCAACTTCAACTCGTAACAACCAATGTAAAACCGGAATGTTTGATTTAGCCACGCCCACCGAGAGAAGACTCAAGAATATAACTGGTGAAAAAAATTCAGACCCATCCCCCTCGGGTTTGCCGCAACCGCTGTCAATGCGGAACAGTTTGTCCCCTAcgtgtgaatgaatgaaataagcTTTCACATTCACTGGGAATGCATCGATGATACAGCAAAACAGAAATATGTGATGAAAATAAACCGAACCTAATAGATTAAGTCGTTAAACAGATGATTACGCCATGATAAGCACATACGAATCGAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113507 lncRNA downstream 176757 11505310 ~ 11584960 (-) False ccdc83
TU113502 lncRNA downstream 275289 11485906 ~ 11486428 (-) True G76693
TU113433 lncRNA downstream 470877 11218169 ~ 11290840 (-) True G76657
TU113438 lncRNA downstream 526027 11234372 ~ 11235690 (-) True G76662
TU113412 lncRNA downstream 650882 11096963 ~ 11110835 (-) True G76642
XR_006251968.1 lncRNA upstream 682332 12448542 ~ 12453651 (-) True LOC122353234
TU113766 lncRNA upstream 839009 12605219 ~ 12610098 (-) True G76902
TU113778 lncRNA upstream 912157 12678367 ~ 12678625 (-) True G76912
TU113780 lncRNA upstream 912797 12679007 ~ 12679218 (-) False uvrag
TU114135 lncRNA upstream 1030454 12796664 ~ 12880735 (-) False G77135
XM_043250354.1 mRNA downstream 7516 11749965 ~ 11754201 (-) True zpr1
XM_043250357.1 mRNA downstream 13660 11747207 ~ 11748057 (-) True LOC122352762
XM_043250890.1 mRNA downstream 17159 11731123 ~ 11744558 (-) True si:ch73-261i21.5
XM_043250759.1 mRNA downstream 42072 11713900 ~ 11719645 (-) True vps11
XM_043249836.1 mRNA downstream 50119 11709431 ~ 11711598 (-) True ift46
XM_043250865.1 mRNA upstream 15286 11781496 ~ 11784153 (-) True bsx
XM_043250981.1 mRNA upstream 20200 11786410 ~ 11787673 (-) True lim2.1
XM_043249820.1 mRNA upstream 299721 12065931 ~ 12186096 (-) False opcml
XM_043249818.1 mRNA upstream 299721 12065931 ~ 12128903 (-) True opcml
XM_043249837.1 mRNA upstream 450880 12217090 ~ 12283587 (-) True LOC122352422
XR_006251915.1 other downstream 554465 11176569 ~ 11207252 (-) False LOC122352715
XR_006251918.1 other downstream 556490 11176569 ~ 11205227 (-) False LOC122352715
XR_006251917.1 other downstream 556491 11176569 ~ 11205226 (-) False LOC122352715
XR_006251916.1 other downstream 556491 11176569 ~ 11205226 (-) False LOC122352715
XR_006251914.1 other downstream 556491 11176569 ~ 11205226 (-) False LOC122352715
TU113815 other upstream 1016143 12782353 ~ 12789090 (-) True mogat2
XR_006251934.1 other upstream 1772519 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 1877081 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 2039909 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 2436052 14202262 ~ 14204127 (-) True G77440

Expression Profile