RNA id: TU114244



Basic Information


Item Value
RNA id TU114244
length 977
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G77220
representative True

Chromosome Information


Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13313194 ~ 13315574 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GAAGCGTTTTAGGTAGTACATATGCTTGGCGTCCTTTGTTTTCGTGTTGCCACTTCCATACCAACCGCTCTCCACCACAAATATGGGAGGATTGCTGTATTCAGCACGGACCCAGTACAGCAGCATCCTCAGACCCAGGTCTTCTGTCTGGCTAAAGCGCAGACTGTCATTGATCAGCTGAAAGCTAAGAGCAGGTCCGTGAGACAGAGCAAAGAAGTCTGCCGTTCCATTAACGTACAAGCTCTCAGCCTCTGTGAAAGACGGCAGTCTGTGggttaaattgtgtttcatgcAGGGTGGATAGTCTCCATCCACAAACAATGGTCGGGCGAACCAGCCGAGCACAAAGTCCAGAGAACACTGGCAGGCTTTTCTGTTCTCCTGTCTGGTTCTGCTAGGTTTGATCCAGTGGGAGGCCAGAGCCATGGACACTCGCCCACCCTGACCGGAACGATAACGATCGTCGTACAAGTGCCAGGCTGCTGCATGAGCCTAGGAGACAACACAGCTCTCTTTGGTGCCGTTGGAAAAGATGCGCGGCCAGGACAGAGAAAAGCGGTAGTGACTGACTCCAAGTTGCTGCAGGGCTCGGAGGTCTCCCGGGATGTTGTGATAACTGTCACTGCCTACGTCGCCTCTGGACACCCGGGTCCCCCCACGAGTGAAAGTGTCCCAGATAGACTTACCTTTCCCATCTTTCTCCCAAGCTCCTTCAACTGAATAGGCAGCAGTGCCGACAGACCACATGAACTTGTCAGGGAAAGTGTCATAGAGGAAGGCTTTGTCACGGGGATATGGAAGTCTGCTAAACCTATCCCATGTGTGCAGCCCTGCGCCTGGAGCAGCTGCCGTCCACTGTAGACGAATGAACAATACGAACGCCAAAACAATCCGTGTCACTTTCATTGTGTCAGAGCACTGGAGAGCTTTCCAAATGTTAAACAAGCGAGTTGTGTCTCTTACCTCACTCCGAGCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114230 lncRNA downstream 102248 13210616 ~ 13210946 (-) True G77208
TU114167 lncRNA downstream 210135 13021653 ~ 13103059 (-) True G77153
TU114171 lncRNA downstream 277609 13033741 ~ 13035585 (-) True G77157
TU114135 lncRNA downstream 432459 12796664 ~ 12880735 (-) False G77135
TU114128 lncRNA downstream 434541 12874551 ~ 12878653 (-) True G77135
TU114273 lncRNA upstream 13068 13328642 ~ 13328893 (-) True G77245
TU114322 lncRNA upstream 170693 13486267 ~ 13488833 (-) True G77284
TU114305 lncRNA upstream 185229 13500803 ~ 13505849 (-) False dclk1a
XR_006251929.1 lncRNA upstream 232680 13548254 ~ 13556657 (-) False LOC122352841
XR_006251928.1 lncRNA upstream 232680 13548254 ~ 13556657 (-) True LOC122352841
XM_043250014.1 mRNA downstream 2119 13309532 ~ 13311075 (-) True zar1l
XM_043250494.1 mRNA downstream 127003 13178586 ~ 13186191 (-) True hunk
XM_043250500.1 mRNA downstream 143979 13164709 ~ 13169215 (-) True eva1c
XM_043250499.1 mRNA downstream 143982 13164714 ~ 13169212 (-) False eva1c
XM_043250501.1 mRNA downstream 151675 13156144 ~ 13161519 (-) True si:dkey-18a10.3
XM_043250735.1 mRNA upstream 4301 13319875 ~ 13323889 (-) True rfc3
XM_043250602.1 mRNA upstream 176699 13492273 ~ 13533042 (-) False dclk1a
XM_043250601.1 mRNA upstream 176699 13492273 ~ 13533039 (-) False dclk1a
XM_043250599.1 mRNA upstream 176699 13492273 ~ 13533039 (-) False dclk1a
XM_043250604.1 mRNA upstream 176699 13492273 ~ 13505920 (-) False dclk1a
TU113815 other downstream 524104 12782353 ~ 12789090 (-) True mogat2
XR_006251916.1 other downstream 2107968 11176569 ~ 11205226 (-) False LOC122352715
XR_006251934.1 other upstream 223155 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 327717 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 490545 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 886688 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 886688 14202262 ~ 14202837 (-) False G77440

Expression Profile