RNA id: TU114273


Basic Information

Item Value
RNA id TU114273
length 252
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G77245
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13328642 ~ 13328893 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCCATCTACCTTTCTCAGATAAGAGTCGCTCCCTTTTACTCAAAAACAGACAGGCTCTTCCCTGTTCATTCCATCCAGTTTGGGCTCCCAGGTGAGAGATGATTCTGCACCTCTGTCCTGGATGGCACGTACGGCACGAATAAGACCCGAAACTCAAGAATGCACATCAACGGCCTGAAGTTTCCACTGAGCCAGCTGATGTACAATGGAAATAATCTCGGCAATGAGACAGTCACACAGCCTCACTTCCTT

Function

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114244 lncRNA downstream 13068 13313194 ~ 13315574 (-) True G77220
TU114230 lncRNA downstream 117696 13210616 ~ 13210946 (-) True G77208
TU114167 lncRNA downstream 225583 13021653 ~ 13103059 (-) True G77153
TU114171 lncRNA downstream 293057 13033741 ~ 13035585 (-) True G77157
TU114135 lncRNA downstream 447907 12796664 ~ 12880735 (-) False G77135
TU114322 lncRNA upstream 157374 13486267 ~ 13488833 (-) True G77284
TU114305 lncRNA upstream 171910 13500803 ~ 13505849 (-) False dclk1a
XR_006251929.1 lncRNA upstream 219361 13548254 ~ 13556657 (-) False LOC122352841
XR_006251928.1 lncRNA upstream 219361 13548254 ~ 13556657 (-) True LOC122352841
TU114333 lncRNA upstream 226663 13555556 ~ 13556192 (-) True G77294
XM_043250735.1 mRNA downstream 4753 13319875 ~ 13323889 (-) True rfc3
XM_043250014.1 mRNA downstream 17567 13309532 ~ 13311075 (-) True zar1l
XM_043250494.1 mRNA downstream 142451 13178586 ~ 13186191 (-) True hunk
XM_043250500.1 mRNA downstream 159427 13164709 ~ 13169215 (-) True eva1c
XM_043250499.1 mRNA downstream 159430 13164714 ~ 13169212 (-) False eva1c
XM_043250602.1 mRNA upstream 163380 13492273 ~ 13533042 (-) False dclk1a
XM_043250601.1 mRNA upstream 163380 13492273 ~ 13533039 (-) False dclk1a
XM_043250599.1 mRNA upstream 163380 13492273 ~ 13533039 (-) False dclk1a
XM_043250604.1 mRNA upstream 163380 13492273 ~ 13505920 (-) False dclk1a
XM_043250603.1 mRNA upstream 164421 13493314 ~ 13533035 (-) False dclk1a
TU113815 other downstream 539552 12782353 ~ 12789090 (-) True mogat2
XR_006251916.1 other downstream 2123416 11176569 ~ 11205226 (-) False LOC122352715
XR_006251934.1 other upstream 209836 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 314398 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 477226 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 873369 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 873369 14202262 ~ 14202837 (-) False G77440

Expression Profile