RNA id: XM_043250601.1


Basic Information

Item Value
RNA id XM_043250601.1
length 3609
RNA type mRNA
GC content 0.49
exon number 16
gene id dclk1a
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13492273 ~ 13533064 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGCTGTGGCAGGTCTGCGGCGCGGGGCTGAATCTCAATGAGAAAGCGGCCAATGTAAATCACTGCAAGAcacggaggagagagagagagagagatagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagacagcagctGCCGACCGAGCAGCCAGCCTCCTCTGCGGGACAACAAAGGAGGTGCCGGGCTCACATCACGACTCCTGTCAGCAACTCAACATCTGAATCGTGACGATTACGAAGAAACCTTCAATATTCCCTAAACCTTCACCTTTAGCTCTAATCCGACTGGACGCCATGGAGGAACACTTTGACGAGAGGGACAAAGTGCAGCGCAACAGCCGGAGCTCAGGCCGGGCGAACGGGCTGCTCAGCCCCACTCACAGCGCGCACTGCAGCCTGTACCGGACGCGCACCCTCAAAGCTCTGAGCCAGGAGAAGAAGGCGAAGAAAGTGCGCTTTTACCGTAATGGTGACAAGTACTTCAACGGCATAGTGTACGCTATCTCGTCGGACCGGATAAGAACCTTTGACGCTTTGCTGGCCGACCTGACCCGAACCCTCTCTGACAACGTCAACCTCCCCCAAGGGGTCCGAATTATCTACTCCATAGATGGTACCAAAAAAATCAGCAATATAGATCAGCTGGTGGAGGGTGAGAGTTATGTGTGTGGCTCCACCGAAGCCTTCAAAAAACTTGACTACTCCAACAATGTCAACCCTAACTGGTCTGTGAATGTGAGGGCCCTGGGCTCCAGCAAGTGCCCCACGTCTCTAGCCAGCTCGAAATCAGGCCCGCAGTCCAAAGAGAGCAAAGACTTCATCAGACCCAAACTGGTCACCATCATCCGGAGTGGGGTGAAGCCACGGAAGGCAGTTCGTATCCTGCTCAACAAGAAGACGGCTCACTCCTTTGAGCAAGTTCTCACTGACATTACAGATGCTATAAAGCTCGATTCTGGCATCGTCAAGAGGATCTACACTCTTGAGGGAAAACAGGTCGCGTGTCTTCAAGATTTCTTtggagaggaggacatcttcATCGCATGCGGCCCAGAGAAGTTCCGTTACCAGGATGACTTTATGTTGGATGAAAGCGAGTGCAGAGTGGTGAAATCAACATCCTATGGAAAGATGGGATCTTTAAACAGAAGCTCTCCCAGAAGTCTTGCCCTTTCCAGACGCAGCAAGTCTCCTTCTGGATCagTGAATGGGACCCCGGCCAGTCAGCTGTCCACACCCCATTCTACAAAATCGCCCAGTCCGTCTCCCACCAGCCCGGGGAGCTTGAAGAAACGCAGGGGATCCCAGCACAGCGgttcctctctgtctctggcCTCTACCAAAGTCTGCAGTATGGATGAGGAGGAAGGACCTGTGAGTGATGCTGAGCCCTTGGAGGAGACGCCGATACCCACAGTCCCAAGCTCCATTTCAGATCGGTACAAAGTGGGCCGAATGATCGGAGATGGAAACTTTGCGGTAGTCCATGAGTGTGTAGAGCACTCAACTGGCAGGGCGTATGCTCTGAAGATCATCAACAAAGGCAAATGCAGAGGAAAGGAGCATATGATCCAGAATGAGGTGGCTATCCTCAGAAGAGTGAAACACCCAAACATTGTGTTGCTGATTGAGGAAATGGACACTTACAGTGAACTCTACCTGGTCATGGAGCTTGTTAAGgGAGGAGATCTTTTTGATGCCATCACCTCCACAAACAGATACACTGAGCGGGATGCCAGTGGCATGCTGTACAATCTGGCCAACGCTATCAAGTACTTACACAGCCTTAACATCGTCCACAGGGACATCAAGCCAGAGAACCTATTGGTGTATGAGCATCAAGATGGAAGCAAATCCCTGAAGCTGGGTGACTTTGGCTTGGCCACCGTGGTAGACGGACCTCTGTACACTGTCTGTGGAACACCCACATATGTAGCACCAGAGATTATTGCAGAGACCGGGTATGGCCTTAAGGTAGATATCTGGGCTGCTGGAGTCATCACATATATTCTCCTCTGTGGCTTTCCTCCATTTCGTGGAAGCACTGATGATCAAGAAGCTCTGTTTGACCAGATACTGCTGGGACAGTTAGAATTCCCTCTTCCATACTGGGACAATGTATCAGACTCAGCCAAAGAGCTGATAGTGTCTATGTTGCAAGTGGAAGTGGATCAGAGATACACAGCGCTGCAGGTGCTGGAACATCCCTGGGTCACTAATGACGGTCTGTCAGAAAATGAGCACCAGCTGTCAGTGGCAGGAAAGATCAAGAAGCACTTTAACACTGGGCCCAAGCCCAGCAACAACACCCCGGGAGTGTCTGTGATGACGACCACCGCTCTTGATAAGGAGAGGCAGATTCTCAGACGAGGATGCCACCAGAATGTGAGCGCAGCTCCCTGGACCACCCAGCCGACCTGTAGCCTCCACATCCCAGCCTTTACTCCCAGTCTGTGCCCCGGTCTGCACCTCGACCCCCCGCCCCAGCCGCCCAACGGACTGCCCGCTCCAGCCCTCACCCCCAGTCCATGTCCCTCTACCACCGCCACCACCactaccaccaccaccaccaccacgcCCGAGTCTGAAGACTTTTCCGCCTGCTCCACGGAGACTGTTCGCTCCCTCTTCTCCCCTTTCTAGCATTGAAAGGGAAGGGAACGAGTGGAAAGGGCACTAAAAGAGAAGAAGGGTTTATGAGGATTCGGAACGCGGCCGAGTGGACCGATGAACTGAACCATTTTGTAATCTGATCACATAAAGGTGCAGGGAAAATGATGACCGTCAAGAAGGGGGTTTCTTGTTTATTTGGTCattataataacttttatttatacataataaatacgttttcttttttattcaagttcaaaaatgtctttttctgttGAAGCACCTtagaaatgtgatgttttttggGTCCGGtattgtttatatgtttcagAGGGAAATTGTAAGAACTTTTAGCTAACTTGATTCCTGGTAATTAGCACCCTTTGTTCTCAAAAACCTTTCTAAGCAGACAGAAACCAATTTGAATTGCTGATACCTCTACAGAAATAAACTCATATGCGGATTTCTATTGCGCGCAGCGCTTGTTCATACGCGAGATGGGgacctttttttgtaatcagtgtaaataatataatttcaattattttgatattgacaatatatttctttatcttAACTAGACAAtgtaagtcacatttaaccatttttgcagtttttaggTATATGGAACATAAGCACAAATGCATTGTTGGAAAGACATAAGCAACATTCCTTTATACAGGGTCAGCTCTTGGAAATACAAATGCCAACGGTTCGGTCTGATGAATGCAGGACATTGATTCAGTGGTACCTCTGTGTCATGAGAAACGCTGCTGTTAGTGTCAGGAGGTCAGGATGGAGTTGAGTGTTTCTGAAGTGCAGTAAGAGGTGTACTAGTAACTCATAGCCCTGCTTACTGTGTCATTCTATTCTCTCATTAGTGCATGGAATACAGAGTGGCTCTTACATTATAATTTGAGACATTgtcttattaaaaaatatattataaccTCA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114322 lncRNA downstream 3440 13486267 ~ 13488833 (-) True G77284
TU114273 lncRNA downstream 163380 13328642 ~ 13328893 (-) True G77245
TU114244 lncRNA downstream 176699 13313194 ~ 13315574 (-) True G77220
TU114230 lncRNA downstream 281327 13210616 ~ 13210946 (-) True G77208
TU114171 lncRNA downstream 456688 13033741 ~ 13035585 (-) True G77157
XR_006251929.1 lncRNA upstream 15215 13548254 ~ 13556657 (-) False LOC122352841
XR_006251928.1 lncRNA upstream 15215 13548254 ~ 13556657 (-) True LOC122352841
TU114333 lncRNA upstream 22517 13555556 ~ 13556192 (-) True G77294
TU114360 lncRNA upstream 136933 13669972 ~ 13670446 (-) True G77315
TU114405 lncRNA upstream 258282 13791321 ~ 13791934 (-) True G77349
XM_043250735.1 mRNA downstream 168384 13319875 ~ 13323889 (-) True rfc3
XM_043250014.1 mRNA downstream 181198 13309532 ~ 13311075 (-) True zar1l
XM_043250494.1 mRNA downstream 306082 13178586 ~ 13186191 (-) True hunk
XM_043250500.1 mRNA downstream 323058 13164709 ~ 13169215 (-) True eva1c
XM_043250608.1 mRNA upstream 712 13533751 ~ 13537968 (-) False ccdc169
XM_043250607.1 mRNA upstream 712 13533751 ~ 13537968 (-) True ccdc169
XM_043250606.1 mRNA upstream 5117 13538156 ~ 13543615 (-) True sparta
XM_043249960.1 mRNA upstream 11005 13544044 ~ 13546323 (-) True ccna1
XM_043249961.1 mRNA upstream 11005 13544044 ~ 13546313 (-) False ccna1
TU113815 other downstream 703183 12782353 ~ 12789090 (-) True mogat2
XR_006251916.1 other downstream 2287047 11176569 ~ 11205226 (-) False LOC122352715
XR_006251934.1 other upstream 5690 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 110252 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 273080 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 669223 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 669223 14202262 ~ 14202837 (-) False G77440

Expression Profile