RNA id: TU114407


Basic Information

Item Value
RNA id TU114407
length 410
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G77351
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13804483 ~ 13804892 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGCCCTGCACCTTGCCTTTAAATGACCCGATCTCTCACTTTTTTCCCACTTTCCCTGGCTCCGTCCCTCTCTTATTCTAGTAAATGGTAATAAAAGTTCGAGACACGCGGCTCTGTACACAACTCCGTCATTAGGCTGCGATTTATTCTATAAACAGTTTGAACTGTATATTGAAGAAAGTTGATTAAAAGCTCAAATTTGACCCTGGTTACTTTGTTACAACACTTTTGTGGTTTCATTGTCCCTTTAAGACAAGTCACTTCACTCGGCGGCCATCTTAAAAATGCCTTGAGGCAAGTATTTTCTGTACAAGTAATCAAAGTAATCAGCTTCTCTCTGcttaaaatctgtatttgtCCGATCCAGTTTGTACACTAGAGCTTGTTTACTATAATAATCTatgaaaaag

Function

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114402 lncRNA downstream 3571 13800013 ~ 13800912 (-) True G77347
TU114405 lncRNA downstream 12549 13791321 ~ 13791934 (-) True G77349
TU114360 lncRNA downstream 134037 13669972 ~ 13670446 (-) True G77315
XR_006251929.1 lncRNA downstream 247826 13548254 ~ 13556657 (-) False LOC122352841
TU114408 lncRNA upstream 197 13805089 ~ 13805329 (-) True G77352
TU114454 lncRNA upstream 182043 13986935 ~ 13987166 (-) True G77378
TU114455 lncRNA upstream 189530 13994422 ~ 13994767 (-) True G77379
TU114469 lncRNA upstream 254547 14059439 ~ 14097135 (-) True G77390
TU114468 lncRNA upstream 271417 14076309 ~ 14097135 (-) False G77390
XM_043250168.1 mRNA downstream 17821 13773844 ~ 13786662 (-) True smg6
XM_043250372.1 mRNA downstream 46224 13754169 ~ 13758259 (-) True si:ch211-244c8.4
XM_043250908.1 mRNA downstream 94035 13699234 ~ 13710448 (-) True gabrr3a
XM_043250276.1 mRNA downstream 120346 13681141 ~ 13684137 (-) True rhbdd2
XM_043250035.1 mRNA downstream 142391 13659137 ~ 13662092 (-) False prr11
XM_043250045.1 mRNA upstream 1212 13806104 ~ 13807819 (-) True ovca2
XM_043249843.1 mRNA upstream 206652 14011544 ~ 14014981 (-) True LOC122352428
XM_043249845.1 mRNA upstream 211745 14016637 ~ 14017638 (-) True LOC122352429
XM_043249846.1 mRNA upstream 217943 14022835 ~ 14023833 (-) True LOC122352430
XM_043250877.1 mRNA upstream 221793 14026685 ~ 14027683 (-) True LOC122353045
TU114352 other downstream 150104 13643291 ~ 13654379 (-) False ypel2a
XR_006251934.1 other downstream 260868 13538729 ~ 13543615 (-) False sparta
TU113815 other downstream 1015393 12782353 ~ 12789090 (-) True mogat2
XR_006251912.1 other downstream 2599257 11176569 ~ 11205226 (-) False LOC122352715
TU114409 other upstream 1227 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 397370 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 397370 14202262 ~ 14202837 (-) False G77440
TU114556 other upstream 399524 14204416 ~ 14208006 (-) True G77441
TU114559 other upstream 429614 14234506 ~ 14264322 (-) True G77443

Expression Profile