RNA id: TU114409



Basic Information


Item Value
RNA id TU114409
length 853
RNA type TUCP
GC content 0.45
exon number 3
gene id ovca2
representative False

Chromosome Information


Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13806104 ~ 13807819 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AGGAAACATGTCGAGTTTAGTTTCTATTTAGCATTTTGAatgttcttttaattattaaaacaacacaatataaCTGTGGTGTTACGTTAGCTCGTGCCTGTTTGCTTCAGTGCGCGCGCCCTTCAACGGTTGCGTCTGTTTCGAGTTTGGAGAATAGCTAGAATATTACAGCTGTGATAGATCATTAATAATGTCCAAATCTGCAGTTCCTCTTCGAGTTCTTTGTATTCACGGTTACCGACAGAATGGGACCTCTTTTAGAGAGAAGACGGGAGCATTGCGCAaactattaaagaaaaaagtggAGCTGGTGTATATTAGTGCGCCACACCAAGTTCCTGCAATCCCAAAAGAAACCAATCAGGAGCCTGAAAAGACGGCCAGCTGTGATGAGGACCAGAGGGGCTGGTGGTTCTCTGATGTCCAGGCACGAAGTTTCAACGCTCAGCAGGAGTGTGAGAGCAGCCTGGGTCTGGAAGAGAGCGTAGAGACTGTGAAAAGCGCAGTGAAGGATCTTGGCCCCTTCGATGGCATCCTGGGTTTTAGTCAAGGATGACCGTGTAATTCCAGAGGAGATGAGCCGCGATCTGCTGCCAGCGTTCGATGGAGCTCAACACCTCATTCATCCCGGTGGACACTTTGTTCCAGCGGCATCTTCTCACAGGCAGACATACCAAGACTTCCTCAAGAAGTTTGAGTGAGATGACAAAAGAGTATCTGAGAGTTCCTGGAATAAACAGGTCTAAGTTAAATGTACTTCTTGAAATATTGCTGCTTTATAAAAGCCTTGGGAATTGAACGGTCAGTCAAAAGATGTTTTACACTGTTCTCAGGGAAACGGTTGCTTTAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114408 lncRNA downstream 790 13805089 ~ 13805329 (-) True G77352
TU114407 lncRNA downstream 1227 13804483 ~ 13804892 (-) True G77351
TU114402 lncRNA downstream 5207 13800013 ~ 13800912 (-) True G77347
TU114405 lncRNA downstream 14185 13791321 ~ 13791934 (-) True G77349
TU114360 lncRNA downstream 135673 13669972 ~ 13670446 (-) True G77315
TU114454 lncRNA upstream 179295 13986935 ~ 13987166 (-) True G77378
TU114455 lncRNA upstream 186782 13994422 ~ 13994767 (-) True G77379
TU114469 lncRNA upstream 251799 14059439 ~ 14097135 (-) True G77390
TU114468 lncRNA upstream 268669 14076309 ~ 14097135 (-) False G77390
TU114539 lncRNA upstream 337251 14144891 ~ 14145304 (-) True G77432
XM_043250168.1 mRNA downstream 19457 13773844 ~ 13786662 (-) True smg6
XM_043250372.1 mRNA downstream 47860 13754169 ~ 13758259 (-) True si:ch211-244c8.4
XM_043250908.1 mRNA downstream 95671 13699234 ~ 13710448 (-) True gabrr3a
XM_043250276.1 mRNA downstream 121982 13681141 ~ 13684137 (-) True rhbdd2
XM_043250034.1 mRNA downstream 143980 13659137 ~ 13662139 (-) True prr11
XM_043249843.1 mRNA upstream 203904 14011544 ~ 14014981 (-) True LOC122352428
XM_043249845.1 mRNA upstream 208997 14016637 ~ 14017638 (-) True LOC122352429
XM_043249846.1 mRNA upstream 215195 14022835 ~ 14023833 (-) True LOC122352430
XM_043250877.1 mRNA upstream 219045 14026685 ~ 14027683 (-) True LOC122353045
XM_043249847.1 mRNA upstream 222511 14030151 ~ 14031155 (-) True LOC122352431
TU114352 other downstream 151740 13643291 ~ 13654379 (-) False ypel2a
XR_006251934.1 other downstream 262504 13538729 ~ 13543615 (-) False sparta
TU113815 other downstream 1017029 12782353 ~ 12789090 (-) True mogat2
XR_006251914.1 other downstream 2600893 11176569 ~ 11205226 (-) False LOC122352715
TU114554 other upstream 394622 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 394622 14202262 ~ 14202837 (-) False G77440
TU114556 other upstream 396776 14204416 ~ 14208006 (-) True G77441
TU114559 other upstream 426866 14234506 ~ 14264322 (-) True G77443
TU114597 other upstream 532406 14340046 ~ 14343012 (-) True G77465

Expression Profile