RNA id: TU114900



Basic Information


Item Value
RNA id TU114900
length 272
lncRNA type intronic
GC content 0.41
exon number 2
gene id G77692
representative True

Chromosome Information


Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 15273913 ~ 15276004 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ttttttcttcttgggTTTGTTCTGTGTGATGTCTTGCTGATGTTCAGCCACAGAATATAGTCCGCTTATCTGCGAATCGAGTGAAGTGTGAACCCTTCCTGGAGTGTGAATCGTCTCAACTGTGTGTGTAACGGAAAAGTTGGACTGGCGAGCCGCCCGTTAATCGGACCCTTTGAACAATCCTGTTGAAAGAACATCAAGGTTGAACATACTCGTCTTTGAATGACTGATTGtacatttattctgtttaatttgtaaaggttgcttatttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU114883 lncRNA downstream 114066 15159465 ~ 15159847 (-) True G77676
TU114881 lncRNA downstream 117322 15156349 ~ 15156591 (-) True G77674
TU114879 lncRNA downstream 134906 15138607 ~ 15139007 (-) True G77672
TU114876 lncRNA downstream 170344 15102149 ~ 15103569 (-) True G77669
TU114743 lncRNA downstream 684033 14588406 ~ 14589880 (-) False vwa3a
TU114908 lncRNA upstream 68996 15345000 ~ 15347289 (-) True G77700
TU114911 lncRNA upstream 92397 15368401 ~ 15368676 (-) True G77703
TU114914 lncRNA upstream 116084 15392088 ~ 15394552 (-) True G77706
TU114936 lncRNA upstream 368399 15644403 ~ 15647863 (-) True G77715
XR_006251906.1 lncRNA upstream 551080 15827084 ~ 15827556 (-) True LOC122352661
XM_043249857.1 mRNA downstream 158465 15111412 ~ 15115448 (-) True LOC122352450
XM_043250046.1 mRNA downstream 644839 14620986 ~ 14629074 (-) True si:ch211-256e16.3
XM_043250047.1 mRNA downstream 655303 14611801 ~ 14618610 (-) True LOC122352591
XM_043250050.1 mRNA downstream 662690 14591019 ~ 14611223 (-) True mosmoa
XM_043250016.1 mRNA downstream 684018 14568330 ~ 14589895 (-) True vwa3a
XM_043249858.1 mRNA upstream 29531 15305535 ~ 15306408 (-) True LOC122352451
XM_043250086.1 mRNA upstream 31895 15307899 ~ 15314674 (-) False LOC122352614
XM_043250085.1 mRNA upstream 31898 15307902 ~ 15315868 (-) True LOC122352614
XM_043251064.1 mRNA upstream 40644 15316648 ~ 15341965 (-) True LOC122353145
XM_043250840.1 mRNA upstream 71463 15347467 ~ 15362276 (-) True mafga
TU114878 other downstream 166161 15107137 ~ 15107752 (-) True G77671
XR_006251888.1 other downstream 684014 14569361 ~ 14589899 (-) False vwa3a
TU114673 other downstream 788643 14484817 ~ 14485270 (-) False im:6904045
XR_006251944.1 other downstream 792464 14467186 ~ 14481449 (-) False LOC122353009
TU114910 other upstream 81681 15357685 ~ 15358232 (-) True G77702
TU115089 other upstream 617679 15893683 ~ 15897098 (-) False npffr1l1
TU115119 other upstream 740667 16016671 ~ 16017770 (-) False LOC122352931
XR_006251960.1 other upstream 754523 16030527 ~ 16057307 (-) False cabp1b
unassigned_transcript_1473 other upstream 842782 16118786 ~ 16118856 (-) True trnag-gcc_65

Expression Profile