RNA id: TCONS_00011016


Basic Information

Item Value
RNA id TCONS_00011016
length 1906
lncRNA type antisense_over
GC content 0.29
exon number 2
gene id XLOC_004937
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 41580801 ~ 41582798 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgagGACATGCAAACCAtgcacaaaaatgaaaaacagacaaacaaaaaaatatttacagaatgaACACAAGAAGGTAGAAAAGACAATCCGCTGATGGCTTTCAGCTTCACTGACCTTCACCTTTAGCTGGGAAATATCGCACCAAAAATTACATCTAAATGGAGATTTCCAGCAAATACAGATTAAGACTACAAAAATGAATTCCAGGAATAGAAAtctcaaaagaattaaaaatgttcatctggGTTCAAAAAGTGACCTTTCCTCACAGTAACACACTGGCTGTGTTGAATCTATAGAttgagagcaccaaatatgtcttAGAAACATACAAAAGAATGATTTCTGATGGCTGTATTTGAGTCTGTAAATGGTGAATGCTGTAAAGCAGAAGTCTACAatccaatgtgtttttttttgcacTATTCTCAGATACAACATAGACAAACCTTGGGATAGCAGTTACTTTAATAAAATATCTTAGCACTAAGACCATCAGTAGGTAGTTcatctttttttcatcatttaaagcACAAACAGTGATGAAGTGCAGCTCTTAAAGGTAAAGTGCACCATTTCTGCATCATTATTAGTGCAGGAAAAACAGTTGCCCTTTAAATGTCTGGTCACAAGAGGAAAGCACTGGTTCAAAGGCAGAACTAGTATGAATGGAAGCTTATTTCCACCACAGAACAAACtaaatctcacaattctgacttttttccacttttgtaattgtgtctttttaaataattttggcaTGATTTAGGAGTATTTCATCTCATAATTCAGATTAGGAGAAACTCGAGTTTTCAtaaaacaattctgactttttctttGGAATTCTGACTGTTTCTTTCTAAGAATTGTAACATTTAATCTCACAGTTCTGacctttttttagattttagtttttCTATCTCATAATTCAAAATTTTATCTGGAAGTCAATTCATAATTCTGACATTTTCAAATGTGGATATTCAGAGATCTCATTATTCAGATTTTAAATCTCATAATATCTTATTCAGATTTTGTTCTGTTGAATTCAGTGttatctcataattctgactttgtttccaatgaaaaaaaatgaattgtgAGATAAAATCTTTGAAATACacagaaaaaagtcagaattatgagattaAAAACCTctgaaattcacaaaaaaaaaatcagaattatgagataaaaactgaattttacagtaaaaatctaatctaatattcacagacaaaaaaagtcagaattatgagataaaaactctaaattccactttaaaagtctgaattatgagataaaaactCTGAATTCCACTTTAAAAGTCTGAATTATGGGATAAAAACTCTGAATTCCACTTTAAAAGTctgaattatgagataaaaactCTGAATTCCACTTTAAAAGTctgaattatgagataaaaactCTGAATTCCACTTTAAAAGTctgaattatgagataaaaactCTGAATTCCACtttttaaagtctgaattatgagataaaaactCTGAATTCCACTTTAAAAGTctgaattatgagataaaaactCTGAATTCCACtttttaaagtctgaattatgagataaaaactCTGAATTCCACTTTAAAAGTctgaattatgagataaaaactcttaaattcactgaataaaagtcagaattataagactAAATATCTGAAATCCACaagaaaaaatctgaattatgaGATAAACTCAATTccacaagaaaaaaattaaatgagattAAAAAATAGGAATTCaaagaaacattttaatttattttttagattcagattaaaaataattttttttccaccTGTGCAATTTAGAGTTCTAATgtcacaattcagacttttttaGTAAAATTATAATCTTGATCTTTTTTGAGAACTTTGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010765 lncRNA upstream 165516 41413512 ~ 41415285 (+) True XLOC_004933
TCONS_00011015 lncRNA upstream 286638 41248760 ~ 41294163 (+) True XLOC_004931
TCONS_00011014 lncRNA upstream 337519 41156859 ~ 41243282 (+) True XLOC_004930
TCONS_00011013 lncRNA upstream 385969 41156859 ~ 41194832 (+) False XLOC_004930
TCONS_00011012 lncRNA upstream 770036 40684858 ~ 40810765 (+) False XLOC_004929
TCONS_00010766 lncRNA downstream 374140 41956938 ~ 41958457 (+) False XLOC_004939
TCONS_00011018 lncRNA downstream 374719 41957517 ~ 41959449 (+) False XLOC_004939
TCONS_00010767 lncRNA downstream 375916 41958714 ~ 41959729 (+) True XLOC_004939
TCONS_00011019 lncRNA downstream 817451 42400249 ~ 42407668 (+) False XLOC_004941
TCONS_00009692 lncRNA downstream 817451 42400249 ~ 42407668 (+) False XLOC_004941
TCONS_00009688 mRNA upstream 29202 41510492 ~ 41551599 (+) False XLOC_004936
TCONS_00009687 mRNA upstream 29202 41510492 ~ 41551599 (+) True XLOC_004936
TCONS_00009685 mRNA upstream 111875 41420355 ~ 41468926 (+) True XLOC_004934
TCONS_00009684 mRNA upstream 210935 41348969 ~ 41369866 (+) True XLOC_004932
TCONS_00009682 mRNA upstream 466723 40905427 ~ 41114078 (+) False XLOC_004929
TCONS_00009689 mRNA downstream 114866 41697664 ~ 41705910 (+) True XLOC_004938
TCONS_00009691 mRNA downstream 408837 41991635 ~ 42199254 (+) False XLOC_004940
TCONS_00009690 mRNA downstream 408837 41991635 ~ 42199254 (+) True XLOC_004940
TCONS_00009694 mRNA downstream 853530 42436328 ~ 42579480 (+) False XLOC_004942
TCONS_00009695 mRNA downstream 854122 42436920 ~ 42579702 (+) False XLOC_004942
TCONS_00009686 other upstream 120167 41460518 ~ 41460634 (+) True XLOC_004935
TCONS_00009675 other upstream 1169119 40411566 ~ 40411682 (+) True XLOC_004927
TCONS_00009671 other upstream 2077123 39503564 ~ 39503678 (+) True XLOC_004924
TCONS_00009670 other upstream 2150484 39430202 ~ 39430317 (+) True XLOC_004923
TCONS_00009648 other upstream 3882084 37698602 ~ 37698717 (+) True XLOC_004908
TCONS_00009703 other downstream 3044092 44626890 ~ 44627007 (+) True XLOC_004951
TCONS_00009724 other downstream 5020643 46603441 ~ 46603555 (+) True XLOC_004973
TCONS_00009746 other downstream 5301046 46883844 ~ 46937955 (+) False XLOC_004982
TCONS_00009747 other downstream 5332573 46915371 ~ 46937946 (+) True XLOC_004982
TCONS_00009795 other downstream 7233362 48816160 ~ 48825502 (+) False XLOC_005016

Expression Profile

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