RNA id: XM_043250690.1


Basic Information

Item Value
RNA id XM_043250690.1
length 1309
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC122352931
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 16016671 ~ 16021774 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAAGTCAAAGAAGTTTTTAAGGAGGAGCAGCAGAAACTTTACAGCAAGGTTTTAGTGGGCAGCAGCGAAGACCGCAGTCGCTCTTGAGGGGATGCAGCGGTCTACTTCACTTTACACATGCTGCTTGGTGCTGACGGTCCACCACCATGGGGGTTTGGTATCTGCGGAGGAAGAGACTTCGAGAAGACCCTGGCTGTCTCAAAGGTTTATGAAGATAGCCGGGCAGGTGTTGCTGGACTGCAGGTGGGAGACATCATTTTGGAGATTAATGGTCAGGATACTGGAGCCATGTTGAATATGGAGGCTCGGAGTAAAATTAAGACCTCTAAACATCAGCTGTTGCTTCTAATTGAAAGaCCTGCAAAAACAGACGTCATACAGCAACACCGTGTTCAAAGACTTCCTGTTAATTCGGAGCCCTCGGTCCGGCCAAAGCAAACCCGTGAGTCCGGACAGGGCCAGTCCGAGAGCAGCTCTCACAGCTTCAGAGCCCCACAGGAGAGAAACAGGCCAGAGCAGCTGAAGCAACACAATAAGGAGTCCACCGCAGGATGTAACTCTGAATCTGATTGTATCCAAACAGTCTCATGTGAATCACAGACTACCACGAAAAAGGTGAGTTTTAATTATCCAGTGTGGAGCTACGGCCCAGTCGATCCTGAAGATCTGATGAGAATCAAGAGAAGGCAAGTTCAACCTCAGCAGCCCAGACAGTCCAACACTTTCAGAATACTACAGGAGGGACTAGCACGAACATCGCTGCCACCTGGAGCGGTCCAGCGGAGTCAAAGGTTTCGTTCTTGTGAGAGATGCGGTTACATCATTGTGACTCAGGTGGTGAAGATCAGAGAGAGACGCTACAGACACGTGGAGTGCTATACCTGCAGGGACTGTGGCTTTAGTCTCATGGAGCGAGGACATTTCTGTGTGGATGACGAGCTGTACTGTGGGAAATGCCAGACAGCcaaaagggaaaataaataaaatcatatgttTCTAGACATTTAGGAAACATGTCATGTTAGTGTGCCGATTCCTGGACAGAATTGCGGTACCCTTTTCAACCGTTAGCTGGTGACATTACATAATGCACTATTCATGTGTATTAAACACTCACAGCTTCATGTTATGTTTACTTagtttatctgaaaaataatgctatagcAAGTGTTGGAGTTGTGTACGtgtccatcgggtgccaggctttgtcagcctggtgagaacggaatgttagagttgaatgttgacagttatgcacctgtggccctttTAGTTTCACTtggattcttggtcataacatggcctccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115092 lncRNA downstream 29189 15935553 ~ 15987487 (-) True G77820
TU115098 lncRNA downstream 85025 15931346 ~ 15931651 (-) True G77821
TU115108 lncRNA downstream 88359 15928092 ~ 15928317 (-) True G77831
TU115107 lncRNA downstream 89178 15927186 ~ 15927498 (-) True G77830
TU115104 lncRNA downstream 95316 15920921 ~ 15921360 (-) True G77827
XR_006251962.1 lncRNA upstream 77221 16098995 ~ 16101344 (-) True LOC122353141
TU115278 lncRNA upstream 150704 16172478 ~ 16174807 (-) True morn3
TU115297 lncRNA upstream 156826 16178600 ~ 16179895 (-) True G77936
XR_006251894.1 lncRNA upstream 167760 16189534 ~ 16193540 (-) False LOC122352611
XR_006251893.1 lncRNA upstream 167760 16189534 ~ 16193540 (-) True LOC122352611
XM_043250432.1 mRNA downstream 7148 15994912 ~ 16009528 (-) True rab11fip1b
XM_043250433.1 mRNA downstream 7159 15994912 ~ 16009517 (-) False rab11fip1b
XM_043251109.1 mRNA downstream 22704 15989593 ~ 15993972 (-) True brf2
XM_043250962.1 mRNA upstream 8753 16030527 ~ 16057295 (-) False cabp1b
XM_043250963.1 mRNA upstream 8753 16030527 ~ 16045397 (-) True cabp1b
XM_043250965.1 mRNA upstream 8753 16030527 ~ 16045390 (-) False cabp1b
XM_043250966.1 mRNA upstream 8753 16030527 ~ 16038420 (-) False cabp1b
XM_043250964.1 mRNA upstream 8753 16030527 ~ 16038416 (-) False cabp1b
TU115089 other downstream 119578 15893683 ~ 15897098 (-) False npffr1l1
TU114910 other downstream 658444 15357685 ~ 15358232 (-) True G77702
XR_006251922.1 other downstream 727004 15229969 ~ 15289672 (-) False LOC122352744
TU114878 other downstream 908924 15107137 ~ 15107752 (-) True G77671
XR_006251888.1 other downstream 1426777 14569361 ~ 14589899 (-) False vwa3a
XR_006251960.1 other upstream 8753 16030527 ~ 16057307 (-) False cabp1b
unassigned_transcript_1473 other upstream 97012 16118786 ~ 16118856 (-) True trnag-gcc_65
unassigned_transcript_1474 other upstream 97178 16118952 ~ 16119022 (-) True trnag-gcc_66

Expression Profile