RNA id: TU115318



Basic Information


Item Value
RNA id TU115318
length 1993
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G77947
representative True

Chromosome Information


Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 16245655 ~ 16252193 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


ttagttttattgttgtcATTTAGGTCAGTTATGTCCCCAGTCATTTCATTTGCAAAGATGACCCATTTCAGGCTCTTCTTTTACATGACCATacttgttatatttaataacgAACGTCAGTAATGCTTATATTcttaaattgtaaattatttaaatggttCTTGATTACTTTAAGTATATACACGCGTCAAAAGTGTTGGGCttgtcatttatcatttatatatttaaaaaaaaaatcagtctttACATTTGATCAACTCcttgctaaaataaaagtatatgtttctattataaataaaaatattaatttgggTTTTcgattaatcaaaaataataaattatttttacatttttattttatcaagcAGCACTACTCTTATAAGCactgataataattaaaaaaatgtttattgagcacaaaatcagtattaaaatgattataatattttatggaaaAAGATCATATGATCAAAAcagctatttaaataaaaatgatatgtaatgttgtttattttaatatttattttatttaataaatgtagcaTTAGTCAGCCTTGCTCAGCATGagacatatacagtatatatttggaaaatatttacatttatacatttattttttcaaatatatatacatttataatacattatatacataatgagGTAGCAATAGCAAAAACACATGACGCACTAAAAATGCACATCATTTCACGTTATGCAAATTTCTCAACCGCTCACTTCCTGCTGGACATGAAACTTTACGTGACATGACGTCACTTGATTCATTATCAGTCTGCTGTGAGATACTTTGAGAGATGCTACAGAAGAGTTAAGATGAATCACATAATCTTGCAGTCAGTGTCTGCTCAGCTGATGGAGCTCTTCCGTGATCGTTTGGGTTCATCGATAAGCTGCGTTGCTGCGAAGGTCAAACGCAAATCTCCTTCTGCTGCCGTCTTTCTGAACGGGAAAACCTCTCTGGTAAATCGAGTCACAAAGCAAGGCATCTGCTTCTTGCCGCCCAACGTTTTCCCTCTGGACTCAAAGTTGTAGGCCACCTGGTAGTTTATTCGAGTCAGAAGTCTTGTGATCTCCAGATCTGGACCTCCTTCATCTTCTAGAAATTTACAAAAGGTTTGAATCAGCTCCGAGCCCAGAGGATGCATGAATGCACCGTAACCTATAAAACAAGCGAGCGTGAGTGAAGAACTGAAGAGTTTGTAACTTCACAAGCTATGCAAATGATGTGGAGAGTTAATAAATCACACCTGGAGATGTGGCGTACATGACTGCTGTGTCGACAGGAATGGAAAACAGCCCAGATATGCCGTCCTCTTCCTCTGAGGATGAAGAGTCTGTCTCCACCTTCACACCTTCATCCAGCTCACTCCCTCGACAAGCCTGGAGAGCAGAGAGATATGATAATCATAAACATGCAGTGAACATTTAACATCCATGCATGACTTGgtgaatgcaacatttttagatttcaaaTGCTCGAGGAGTACTAAAGAGTCAAAGGATTTCTAGAGTAGAATGTATTATCAACAAAACCGCCAATATTCGCTGAAGTACAGGATCTTATGCCAGAATAGGAGTAAaacggtttccacaaaatgtACCTGGACCAGAAAGAGCTTGCTCTTGTCTGCCATTGAAGGTCCTCCAAAGCAGCTGTAGATCTCGACCAGTTTCACAGCACGTCCGTCAGCGCCGAACACAACACCCTCCTCACCGTGACTCGATATGACTCCCAAAAAACACTCTTTCACTGTCTTCTTGCTCTCTGAGGATGAAATGCAAGTTAGCaagttttctgaataaattgtGCAAGTTACTCTGATTGTTACAATACAAGAACGTAGGCTACCGTGATTATCATAGTCAGGACTAATTCATATTGACACAATATTTTCTGTGCAAACTCACTCATAGAGTTATAATCGCATTTAATCTGTGCTTGCTAATAATTTACTGTTAAACACgaatttagaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006251894.1 lncRNA downstream 52115 16189534 ~ 16193540 (-) False LOC122352611
XR_006251893.1 lncRNA downstream 52115 16189534 ~ 16193540 (-) True LOC122352611
TU115292 lncRNA downstream 52664 16189560 ~ 16192991 (-) False LOC122352611
TU115293 lncRNA downstream 52664 16189560 ~ 16192991 (-) False LOC122352611
TU115297 lncRNA downstream 65760 16178600 ~ 16179895 (-) True G77936
TU115371 lncRNA upstream 99204 16351397 ~ 16353048 (-) True G77979
TU115372 lncRNA upstream 122027 16374220 ~ 16379551 (-) True G77980
TU115407 lncRNA upstream 142021 16394214 ~ 16395645 (-) True G78010
TU115417 lncRNA upstream 163715 16415908 ~ 16490354 (-) False LOC122352830
TU115413 lncRNA upstream 180334 16432527 ~ 16437586 (-) True zgc:100918
XM_043250245.1 mRNA downstream 1622 16240176 ~ 16244033 (-) True dusp11
XM_043250246.1 mRNA downstream 1631 16240176 ~ 16244024 (-) False dusp11
XM_043250244.1 mRNA downstream 6586 16232746 ~ 16239069 (-) True stambpa
XM_043250243.1 mRNA downstream 13075 16227319 ~ 16232580 (-) True ess2
XM_043250866.1 mRNA downstream 18480 16217026 ~ 16227175 (-) True dgcr2
XM_043251163.1 mRNA upstream 4086 16256279 ~ 16283760 (-) True tcf7l1a
XM_043250158.1 mRNA upstream 89836 16342029 ~ 16345823 (-) True march5l
XM_043250084.1 mRNA upstream 146660 16398853 ~ 16401534 (-) True stc1l
XM_043250525.1 mRNA upstream 164719 16416912 ~ 16431462 (-) False LOC122352830
XM_043250524.1 mRNA upstream 164719 16416912 ~ 16431462 (-) True LOC122352830
unassigned_transcript_1474 other downstream 126633 16118952 ~ 16119022 (-) True trnag-gcc_66
unassigned_transcript_1473 other downstream 126799 16118786 ~ 16118856 (-) True trnag-gcc_65
XR_006251960.1 other downstream 188348 16030527 ~ 16057307 (-) False cabp1b
TU115119 other downstream 227885 16016671 ~ 16017770 (-) False LOC122352931
TU115089 other downstream 348557 15893683 ~ 15897098 (-) False npffr1l1

Expression Profile