RNA id: TU115417


Basic Information

Item Value
RNA id TU115417
length 1492
lncRNA type read_through
GC content 0.34
exon number 2
gene id LOC122352830
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 16415908 ~ 16490354 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atttttatatatatatatatatatatatatatatatatatatatatatatataaatgatatgatatgatatgattcaGAGCATGAATCACAAAAGAACCATTGTAGGTACAATGCTAAAGATAAAAACATTGGCTAAAAATGCATTGCGATCTGTACAAACAGGTTTAGTTTTGTTCTTCGGGTGACTTTGGTTTTCCCCACAGTTCTTCTTCGTTGAGgctaaattgttttaaatcagtaGTTCTTGATTATTGAATAAGGGGGGAAAAAACGAAGTAACTAAACGTTTAGAATAGCAAAATATCTCaattattaacatttgaaaTCTCTTTTGATATCGAGGTCAAATTTGTGTCCAAACCGGTTgttactgttaactaaaactattaaaaaaattttggtAACTGAAgtcacagcaaaaataaatataaaatgaatgacttaaaaactgaaacactgCCTTgacgaataaaataaaatacgtttGAAAAAGTAGTATActtctttaacaaaaaaataaataaaaaaaattcaatgccaaaaagaaataaaatatcaaaatttcaatattaatatttggtcaaaaattaCAACATAActgtattacaattaaatagaaaaaaaaaaattgaaatgttaataaataatataatagtatataaatatactaacCGAGACAGCAATCAATTCAATAGGTTTTATGATAAACCATTTGAAGTAAAATCAGCAGAgaacaactaaaactaaaagatttttcattgttttgagatgaaaatgaaaatgttctacTCATTTACTcagttgttccaaatctgtatgaatttctttgttctgctaaaCACACAGGAAGATATATTGAAAACAAATTATTGTAACCAGAGTGTtctggtcaccattgacttctatagtattttttgttGGGAGTCAAGGGTGACCCAAAACTTTTCTTCACAATaccttcctttgtgttcggcagaactaAGAACTCCAAACAGGTTTTGAGCTTCTCGAGGGTCAGTAAATGATGgaagagttttcatttttgggtgaactattcctttaaaagcacatttggtAAACAGTTTTCATCTAGACCGTGTCCTGTGTGAAGCCTGAACTCTTCCAAGTGCAGGACTTCAAGCACCGAGAACTTCAAAGCACGACCGATGAGATGTTGATCAGAAGCCAGCTGTGGAAAAAGCAGAAAGATTGGAGGATCTGTTCACTGCGCCTCACAGTTTCTCCATCTCTAAGGCTTCACCCTCGTCTCTTCAAATAACAGCAGAGGAgcctgaggaagaggaggatgaggaagatgaagagGGGTTTGAAGGGGAGGCCGGAAGATTCCACAGCACCCATTTACGCTTGTTTTGTCGTTTTTGGGACAGGTAGTCCTCCTTTTCCCGCTCTTTCCGAGCTCTCTGGTAGTGGTCGTCCTCCTTCAGGTACCAGACCGGAGGCCAGCGGTGCTTCTCAAAGTATTCTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115407 lncRNA downstream 20263 16394214 ~ 16395645 (-) True G78010
TU115372 lncRNA downstream 36357 16374220 ~ 16379551 (-) True G77980
TU115371 lncRNA downstream 62860 16351397 ~ 16353048 (-) True G77979
TU115318 lncRNA downstream 163715 16245655 ~ 16252193 (-) True G77947
XR_006251885.1 lncRNA downstream 166159 16246653 ~ 16249749 (-) True LOC122352562
XR_006251950.1 lncRNA upstream 5623 16495977 ~ 16497273 (-) False LOC122353043
XR_006251951.1 lncRNA upstream 5623 16495977 ~ 16497273 (-) True LOC122353043
XM_043250084.1 mRNA downstream 14374 16398853 ~ 16401534 (-) True stc1l
XM_043250158.1 mRNA downstream 70085 16342029 ~ 16345823 (-) True march5l
XM_043251163.1 mRNA downstream 132148 16256279 ~ 16283760 (-) True tcf7l1a
XM_043250245.1 mRNA downstream 171875 16240176 ~ 16244033 (-) True dusp11
XM_043250246.1 mRNA downstream 171884 16240176 ~ 16244024 (-) False dusp11
unassigned_transcript_1474 other downstream 296886 16118952 ~ 16119022 (-) True trnag-gcc_66
unassigned_transcript_1473 other downstream 297052 16118786 ~ 16118856 (-) True trnag-gcc_65
XR_006251960.1 other downstream 358601 16030527 ~ 16057307 (-) False cabp1b
TU115119 other downstream 398138 16016671 ~ 16017770 (-) False LOC122352931
TU115089 other downstream 518810 15893683 ~ 15897098 (-) False npffr1l1

Expression Profile