RNA id: XM_043249807.1


Basic Information

Item Value
RNA id XM_043249807.1
length 7507
RNA type mRNA
GC content 0.53
exon number 50
gene id LOC122352396
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4590288 ~ 4627041 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAGAGTGGACGCGAAGACCAAAGAAGTGATGCAGGAATGGAGTCTGACCAACATCAAGCGCTGGGCGGCTTCTCCCAAAAGCTTCACCCTGACCACTGAAGGAGAGCAGATTGCACAACTCATCGCTGGTTACATCGACATCATTCTCAAAAGGTCAACAGTTCTTCAGCAGCAGTTTAATAAAGTTGTGAAAGTGGAAGCGGGCTCCGTTGCTCTGCCGGCCATCATCAGCTCTGGTGCAGGTGGTCAGAGGAGCTTTCAAATGGGCTCCATGCCACAGGCCAAACAGCACATCACCAGTGGGCAGATGCACAGAGGACACATGCCGCCTCTGACCTCAGCTCAGCAGGCTTTGACCGGCACCATTAACTCCAGTATGCAGGTGCGGTACAAGCAGTTCAGGCCCTCTCTTGATGAGTTTGGCGCCCTGCCTCCACTGGGCACTGATGCGGCCTCTCAAGCATGGAGGAAGAACAAAATGGATGAGTCCAAACATGAGATTCATTCTCAGGTGGACGCCATAACTGCGGGAACTGCCTCTATGGTCAATCTGACTGCAGGAGACCCAGCAGAGACGGATTACACCGCTGTGGGCTGTGCAGTCACCACCATCTCCTCCAACCTGACCGAGATGTCTAAAGGTGTGAAACTGTTGGCAGCGCTGATGGAGGACGAGGGAGGAAATGGCCAGCAGCTTTTGGGTGCTGCCAAGAACCTGGCGTGCGCTGTGTCCGATATGCTCAAGACCGCTCAGCCCTCTAATACTGAGCCACGACAGAACCTCCTGCAAGCAGCGGGTAATGTAGGTCAGGCCAGTGGTGAACTCCTGCAGCAGATCGGAGAGTCTGATGCTGATCAGCACTTCCagTCTGTAGGTACAGCAGCATTCACACACTCCAGACGGACACGCTATAGTCAAATGCTGGACATGTTGATGCAGTTGGCAAAGGCTGTGGCTAATGCAGCCGCTCTGGTGTTAAAAGCCAAGAATGTGGCTCAGAAAACAGAAGATTCAGCTCAACAGAACCGAGTGATTGCCGCTGCCACCCAGTGTGCCCTGTCCACGTCACAGCTTGTGGCCTGCACCCGAGTGGTGGCTCCCACCATCAGTTCCCCTGTGTGTCAGGAGCAGCTCATCGAGGCCGGGAAGCTGGTGGCTAAGTCTGTGGAGGGTTGCGTGGAGGCGTCACAGGGCGCGACCAATGACGAGCAGCTGCTCAAACAGGTGGGTGTGGCCGCCACAGGTGTCACTCAGGCTCTCAACGAGCTGCTGCAGCATATCAGACAGTATGCCAGCGGAGGACAGCCAATCGGGGGGCACGGAGAGGCCACTGACCGCATCCTGGATGTGACCGATAACATCTTCAGCTCCATGGGAGACGCAGGGGAGATGGTGCGACAGGCTCGGATCCTTGCTCAGGCCACCTCAGATTTAGTCAATGCCATCAAAGCCGACGCGGAGGGTGAAACCGACCTGGAGAACTCCCGCAAACTTCTGTCTGCTGCCAAACTCCTGGCTGATGCCACCGCCAAGATGGTAGAAGCTGCGAAGGGTGCGGCTGCTAACCCTGACAGTGAGGAGCAGCAGCAGAAGCTGCGTGAAGCTGCGGAGGGTCTGCGCATGGCCACCAATGCTGCTGCACAGAACGCCATTAAAAAGAGGCTGGTCAACAAACTGGAGAATGCAGCCAAACAGGCGGCTGCAGCTGCCACTCAGACGATTGCTGCCGCGCAGAGATGCCGCCTTTCCAACAAGAACCCTGCTGCCCAGCAGCAACTCGTGCAGAGCTGCAAGGTGGTGGCAGATCAGATCCCTCAGCTAGTTCAGGGTGTGAGAGGAAGTCAAGCTCAGCCTGACAGCCCCAGCGCCCAGCTCGCCCTGATTGGAGCCAGTCAGAACTTCCTCCAGCCCGGAGCGAAAATGGTGACTGCAGCAAAAGCCACGGTTCCCACCATCAGTGACCAGGCATCTGCCATGCAGCTCAGTCAGTGCTCCAAAAACCTGGCTAGCGCTCTCGCTGAGCTGCGCACCGCCGCACAAAAGGCTCAGGAAGCATGTGGTCCTCTGGAGATTGATAATGCTCTCACAATGGTACGAGGGCTGGAGAGGGACATGCAGGAGGCCAAAGCTTCAGCTGCTGAAGGCAAACTCAGACCCCTGCCTGGAGAAACGctggaGAAGTGTTCTCAGGATCTGGGCTCTAGCACTAAAGCCGTGAGCTCTGCTATCGCTCAGCTTCTCAGTGAAGCCACCCAAGGCAATGAGAACTACACAGGTATGGCTGCTCGTGATGTGGCTCAGGCTCTGCGTTCACTGGCTTCGGCTGCACGTGGAGTGGCCGCCAACACGGAGGACCCTCATGCCCGTAATGCCATGCTGGACTGCACCGCAGATGTCATGGACAAATCAGCCAGCCTGATCGAGGAGACCAAGAGAGCCATCGCCAAACCGGGAGACCCTGACAGCCAACAGAGACTGGCCCAGGTAGCTAAGGCAGTGTCTCAGGCTCTGAACCGCTCCGTAAACTGTCTGCCGGGGCAGAGAGACGTGGATAATGCCATCAGAACTGTAGGAGAAGCCAGCAAGAAACTCCTGTCTGATAAATTCCCAGTGAGCGGGAAGAGTTTCCAGGAGGCTCAGGCGAATCTGAACGAGGCAGCAGCTGGACTGAACCAGTCAGCCAATGAGCTGGTGCAGGCGTCACGCGGCACCACCCAGGACCTGGCAAAAGCCTCCGGGAAGTTCGGACAAGACTTCAATCACTTCCTGCAGGCTGGAGTGGACATGGCTGGACAATCCCAGTCTAAAGAGGACCAGACTCAAGTGGTTACCAACCTTAAGACCATCTCCATGTCCTCCAGCAAACTTCTGCTGGCTGCTAAAGCTCTGTCCACAGACCCCAACTCACCCAACCTGAAGAACCAGCTAGCTGCTGCCGCTCGCGCGGTGACAGACAGCATTAATCAGCTGATCAGCATGTGTACCCAGCAGGCTCCGGGACAGAAGGAGTGTGACAACGCTCTCCGTGAGCTTGAGACGGTTGGAGGAATGCTGGAGAATCCCACAGAAGCCGTCAATGATTTGGGCTACTTTGACTGCATTGACAGTGTGATGGAGAACTCAAAGGTTTTGGGTGAGGCTATGGCTGGCATTTCCCATAATGCCAAGAACAGTAACTTGCCAGAATTTGGAGACTCGGTCAGTTCAGCATCTAAAGCGCTGTGTGGTCTCACTGAGGCAGCCGCTCAGGGGGCGTATCTAGTGGGTGTGTCTGACCCGAACAGTCACGCTGGGCAGAAAGGGCTTGTGGACCCCTCACAGTTCGCCAGAGCCAAACAGTCAATCCAGATGGCCTGTCAGAACCTAGTGGACCCAGCCTGCACCCAGTCTCAGGTCCTCTCTGCTGCCACGATTGTTGCCAAACATACTTCAGCCTTGTGCAACGCCTGTCGACTCGCCTCCTCCAAAACATCCAACCCAGTTGCTAAGAGACAGTTCGTCCAGAGTGCCAAAGAGGTGGCCAACAGCACCGCCAACCTCGTCAAGTCTATCAAAGCTCTTGATGGGGCCTTTAACCAGGAGAACAGACAAAAGTGTAAGGAAGCCACTGGGCCGCTCATCGAGGCTGTGGATAACCTGACCGCCTTCGCTTCAAACCCAGAGTTTGCTAGCGTACCTGCACAGATTAGCCCCGagGGTCTGGCAGCAATGGAGCCTATCGTAGCGGCCGCTAAGACCATGCTGGAGAGCTCTACAGGCCTGATTCAGATGGCCCGTTCACTGGCCGTCAACCCTAAAGACCCGCCCAAATGGTCTGTGCTGGCCGGACACTCTAGAACAGTGTCTGACTCCATCAAGAAACTCATCACTAACATGAGGGAGAAGGCTCCAGGTCAGAGGGAGTGTGATGATGCCATTGAGGTTCTTAATAACTGCATCCGTGAGGTGGACAAGGCGTCTCTGGCAGCAATCAGCCAGCAACTCACACCTAGAGATGACATCTCCCATGAGGCCCTTCACGAGCAGATGGCAGCATCTGTGCATGAGATCAGTAACCTGATTGAACCAGTGGCCATCGCAGCCCGCTCCGACGCCTCTCAGCTGGGTCACAAGGTGTCTCAGATGGTTAGTTACTTTGAGCCACTTATCATGGCTGCCATCGGTACAGCGTCGAAGATCCTGAACAGCCAGCAGCAGATGAGCGTCCTGGATCAAACTAAGACTCTGGCTGAGTCTGCCCTACAGATGCTCTACACTGCCAAAGAGGCTGGAGGAAACCACAAGgcGGCTCACACGCAGGAAGCTCTAGAGGAGTCTGTTCAGATGATGAAGGAGGCGGTGGATGATCTGGCTGCAACTCTGGCAGAGGCGGCCAGTGCTGCAGGAGCGGTGGGCGGCATGGTCAACTCCATCACTCAAGCCATCAATAAGATGGAAGACGGTCCTGGAATCGAACCTGAAGGAACGTTTGTGGATTATCAGACCACGATGGTGAAGACGGCCAAAGCTATCGCTGTCACCGTTCAGGAGATGGTTACCAAATCCAACACCAACCCTGATGAGCTGGGTGGTTTGGCCAATCAGCTGACCACAGAGTTCGGTGACCTGGCATCCGAGGCCAGATGTGCAGCCATGACTGCTGAGAATGACGAGATCGGTTCTCACATCAGGAAGCAGGTGACAGAGCTGGGCTACAGCTGCACTGGTCTGGTCAGTAAAGCAGGAGCACTGCAGTGCAGTCCAAACGACTCCTACACCAAAAAGGAGCTCATCGACAGTGCTCGGAAAGTCTCCGAAAAGGTGTCTCACGTGCTGGCGGCTCTTCAGGCGGGCAATCGTGGTACTCAGGCCTGCATTACCGCTGCCAGTGCTGTTTCTGGCATCATTGCCGATCTGGACACCACCATCATGTTTGCCACCGCAGGCACTCTCAACCGAGAGAACGCCGAGACCTTTGCAGACCACAGAGAGCACATCCTGAAGACAGCTAAAGTTTTGGTGGAGGACACAAAGCTGCTGGTGTCTGGAGCAGGAGCGAGTCAGGAGAAACTGGCTCAGGCTGCACAGTCGTCTGTTAACACCATCACTAAACTGGCTGATGTGGTCAAACTGGGAGCGGCCAGTCTGGGCGCTGAAGACCCTGAGACACAGGTGGTTCTGATTAATGCGGTGAAGGATGTGGCTAAAGCTCTGGGTGACCTGATCAGCGCCACGAAGGCTGGCGGCAAACCTCATGATGATCCTGCCATGTTACAGCTCAAGAACTCTGCTAAGGTGATGGTGACAAACGTGACGTCTCTACTGAAGACGGTGAAAGCCGTGGAGGATGAGGCCACTAAAGGCACACGTGCACTAGAGGCCACCATAGAGCACATCAAACAAGAGCTGGCTGTGTTCAGCAGTCCAGATCCTCCTCCAAAGACCGCCACTCCAGAGGAGTTCATCCGCATGACCAAAGGCATCACGTTGGCCACGGCGAAAGCAGTGGCTGCTGGAAACTCGTGCCGCCAAGAGGATGTGATCGCCACTGCTAACCTGAGCAGACGAGCCATCGCTGACATGCTGCACTCCTGCAAGCAAGCGGCATTCCACCCGGAGGTGAAGCGAGATGTTCAGGCTCGAGCACTGCGCTTCGGCTCTGAGTGTGCCACAGGATACCTTGGCCTGCTGGAGCATGTGCTAGTGATCATTCAGAAACCAAGTCATGACCTTAAGCAGCAGCTGGCAAACTTCTCCAAGCGTGTGGCCGGTTCAGTGACAGAGCTCATACAGGCTGCAGAGGCCATGAAAGGTACAGAATGGGTGGATCCTGAGGACCCGACCGTCATCGCCGAAAATGAGCTGCTGGGAGCCGCAGCTGCCATTGAAGCTGCCGCCAAGAAACTAGAGCAGCTCAAACCCCGGGCCAAACCCAAGGAAGCTGATGAAAGTCTAAACTTTGAGGAACAAATTTTGGAAGCAGCCAAATCCATCGCTGCAGCCACCAGCGCTCTGGTCAAAGCTGCATCTGCTGCTCAGAGAGAGTTGGTGGCTCAAGGGAAGgtCGGGGCAATCCCAGCAAACGCGGTGGATGATGGACAGTGGTCACAGGGTCTCATTTCTGCTGCACGTATGGTGGCTGCAGCTACGAACAACCTGTGTGAAGCGGCTAACTCTGCGGTTCAGGGTCACGCCAGCGAGGAGAAACTCATTTCTTCGGCCAAACAGGTGGCAGCATCCACCGCTCAACTGCTGGTGGCCTGTAAGGTCAAGGCTGACCAGGACTCCCAGACCATGAAGAGACTGCAggctGCAGGTAATGCCGTCAAGAGGGCGTCAGATAACCTGGTGAAGGCGGCGCAGAAGGCTGCGTTCGAGGCCCAAGATGATCAGGCCGTGATGGTGAAGAGCAAGATGGTAGGCGGTATCGCTCAGATCATCGCCGCTCAGGAAGAGATGCTCAGGAAGgagagagagctggaggaagcCAGGAAGAAGCTGGCCATGATACGACAGCAACAGTACAAGTTCCTGCCGTCAGAGCTCAGAGAGGACGGACAGGAACAGTGAGCCGCGCCAGAGACTAATCAGTGACATTGAGAGCTCGAGAAAAGTCATCAACGATATGCAATGAGTAAAAAGTGAACTATGTATCAGGATGtctattttaagtgttttgtttatttccgtcacttttttttggagaatTGCCATGCCAGCTTTATTGTTTAGTTGTATTTGGATAAAGCATATACAAATCCTTTTAATgtctatattatttttcttcagtaCTAGATAGGTCAGATCAgcagtgtgtgttttgaaagctCGTGATCGTGGCAGGGGCCAAACAGTGTTTGTAAGCTTTTCAAGAcaaaatttgtactttttcaatttttttttttttttttttttttttttgtggcaatTTGGACCAGCAGTGCAATGATTAACTTTGCGTCCTAGAAACAATTCACGGAGAAAACAtatcattttctaaataaaagaataataaagcTTTGAAATGTTACAATAGCATCTCCTGTTAATGTTTTGTCGATGTTTGCTTTTGTGACAACTTGGTCTGCTAGCGAATGATATCTTTTATAACGCATAAAgccatatttacatttttgcttttataatgtgttttttttttttttgttcttttcttgcTATTAACTGTTGTAATTTACTTATGTGATGCCCGTGCAGATGTAGACAAGACGATATTAGATTAACAAAAATTGCTTAATTGCAATGGTTGTTCATGAAAGAATCAGAGTTATTATAAAGAActgttttaagaaaagaaaagactgtTATTAATagatgaaatgcatttaacagTTTGAGTTTTCACCATTGCTGCCTTTCCTGTTGCATTCGGTATGTTCTGAATCTTGCCtgcctttatattttataattgtgtATTTATCTGTTAACAGTTTCTCACCTAAAATAAGCAGACACACTTAGTCGATGTGTTTATCTAAACACTCATAAATTCACTGTTTTGCAAATA

Function

GO:

id name namespace
GO:0007016 obsolete cytoskeletal anchoring at plasma membrane biological_process
GO:0007155 cell adhesion biological_process
GO:0001726 ruffle cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005158 insulin receptor binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110640 lncRNA downstream 48507 4092043 ~ 4541781 (-) True G74768
TU110650 lncRNA downstream 55206 4085753 ~ 4535082 (-) True G74770
TU110651 lncRNA downstream 55206 4085753 ~ 4535082 (-) False G74770
TU110644 lncRNA downstream 58052 4081576 ~ 4532236 (-) False G74769
TU110649 lncRNA downstream 58052 4081576 ~ 4532236 (-) False G74769
TU110726 lncRNA upstream 52662 4679703 ~ 4680232 (-) True G74819
TU110773 lncRNA upstream 212176 4839217 ~ 4840661 (-) True G74846
TU110793 lncRNA upstream 264553 4891594 ~ 4897087 (-) False G74858
TU110794 lncRNA upstream 264553 4891594 ~ 4897087 (-) True G74858
TU110797 lncRNA upstream 276936 4903977 ~ 4904469 (-) True G74861
XM_043250400.1 mRNA downstream 182351 4358660 ~ 4407937 (-) False nrg1
XM_043250401.1 mRNA downstream 182351 4358660 ~ 4407937 (-) False nrg1
XM_043250394.1 mRNA downstream 199540 4358660 ~ 4390748 (-) True nrg1
XM_043250396.1 mRNA downstream 199542 4358660 ~ 4390746 (-) False nrg1
XM_043250399.1 mRNA downstream 199561 4358660 ~ 4390727 (-) False nrg1
XM_043251103.1 mRNA upstream 196423 4823464 ~ 4867579 (-) False LOC122353167
XM_043251099.1 mRNA upstream 196423 4823464 ~ 4867579 (-) False LOC122353167
XM_043251098.1 mRNA upstream 196423 4823464 ~ 4867579 (-) False LOC122353167
XM_043251100.1 mRNA upstream 196423 4823464 ~ 4867578 (-) False LOC122353167
XM_043251101.1 mRNA upstream 196423 4823464 ~ 4867567 (-) False LOC122353167
XR_006251921.1 other downstream 677546 3905614 ~ 3912742 (-) False LOC122352741
XR_006251920.1 other downstream 677546 3905614 ~ 3912742 (-) False LOC122352741
XR_006251926.1 other downstream 982500 3601612 ~ 3607788 (-) False hnrnpd
TU110254 other downstream 1250359 3337388 ~ 3339929 (-) False LOC122353137
TU109952 other downstream 2392977 2194115 ~ 2197311 (-) False LOC122352692
TU111527 other upstream 1911493 6538534 ~ 6540926 (-) False si:ch211-113d22.2
TU111553 other upstream 2001384 6628425 ~ 6631157 (-) False sprn2
TU111552 other upstream 2001389 6628430 ~ 6631157 (-) False sprn2
TU111694 other upstream 2550283 7177324 ~ 7180821 (-) False G75454
TU111693 other upstream 2550710 7177751 ~ 7180821 (-) True G75454

Expression Profile