RNA id: XM_043249826.1


Basic Information

Item Value
RNA id XM_043249826.1
length 1824
RNA type mRNA
GC content 0.47
exon number 8
gene id r3hcc1
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6507050 ~ 6515927 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGCCGgtcaccctggctcttcctCGTGTCAATGGCTGTTACCTCCCAAAACAAGAGACTGAATTCATCCATACAGTCCTGGAGGAGCTGGATGTGTTTCAACAGAGAAATGAGCCCAAAAGCGTTCTGCTCTTCCCTCCTGTCCCGAGCCGACTTCGCTTCCTGATTCACCAAACCATCGCAAATCATCCCAGCCTCAGCACCTTCTCTGTGGGCGAGGGCTGCGCTCGCAGGGTCGTAGTGTGTTATTCAGACCTCAGGTTGCCAGAAGACGACGACAGAGATGCGAAGGGCAGATCCAACGAGAGAGCGCGCAGTCGGGACAGAGACACGGAGACCAACAGCAACACACAGTCACTGGAGACTGGCTTCAACAACAGACGGAGAGCCAGGCGGCCAGACAAGGCTATTTACGTTCCCCGTGTTATGAGACACAAGATAGATCTGGAACAAGCCAATCTCAAGGAAACACGCGTGGGATCCTCCTCTGACGTTACCAAGGGAGCTCTTGTAGCCAATCAGAAGCCAGAGGTGGACAGCACTGGGCAGTCAGTGGCCGATGAGGAGTTCGTGCAGCTGTCGAGGACGGGTCCGTCACCGTGGCCTCCAGCCTGGGACCAGACAGTGACTTTCTTCACATCTTTGACATTAGATGACGAGACGGATGAAAACTGCGCCAACAACACGGACGTCCCCGCTGACGCCACGCTCCAGCAGCAGGACCTTGATGAAAGTCTGCTCTCTGAGATCAAAGCCAAGCTCAAACACGAGGATGTCACCATACTTAACACCGTCGTTGATTTCCCCGCCTATGCCAACATCTGGCTGGACCCACAGGAGTTCGGCCACGTCATTGAGATCTACGACTTTCCAGCCATGTTTAAAACGGACGACCTGCTTGATGCCTTTGCTGACTATAGtgaAGGAGGAATGAAGATCAAGTGGGTGGATAACACTCATGCTCTCGGCGTATTTTCTAGTCCATCAGCAGCTACGGAGGCACTGTCCCTCAAACATCCCATACTGAAGACCCGCGCGCTGCTAGAGGGGAGCCAGAAAGCAAAGTGGAAAGCAACCAGACGCGCAGAGTTCATTCAGCCGGTGAAGGAGAGGCCGCGGACGGACACAGCTGTGGCTCGCAGGATGGTGACCAGAGCTCTGGGCTTGAGAGGGAGGCGCTTCGAGATGAGAAACAACTTCAACTGAATACAGTTCCTCACCGGAGTCGGACTTTCCTTCGGTTTAAACTAGACTGGGAAAAGAACTACTACACCACTCAGACTAAGGAAGGAGACGCTGCACATAATGTTGAAATGTTGGTAAAcatgaaatatacaaaatgtcCCAAGTATTAATTGGTTGAGCCAGTAGTATTTGAGTAAGTGAGCATTTGATGTGAGTTTTGGTAAGCATTCAGAAGACTTTGGTTCTTTCTACTGTAGCAGGACACAGCCCTTAATATGGATTTTTCCAGCTCTGTTTCTTTATGCTAATAACCCCGTCTTGTCCAGCTATTGTaaatagatcatttttattaacttaaatattatttaatacaaatattttggcTCATTAGAGTTCCTGAAAATGGGTCATCCAGGAACATCATATTGAATCTggttaaattgtttttttttctcatgttttcatGTTCAGCTCACGAAATTTGACATGgtctaaatgacatttaaaaatactagtGTTATTAGAATTATCTACATTcagttgtatgttttttttcaacaatatGGACAAATGACTTATTTCTGCACTACGATGCTTTACAATTGTGTGATAcatcatgttttaaatgttttgtttgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111315 lncRNA upstream 302129 6179206 ~ 6204921 (+) True G75192
XR_006251905.1 lncRNA upstream 316610 6186147 ~ 6190440 (+) True LOC122352660
TU111146 lncRNA upstream 531492 5942274 ~ 5975558 (+) False G75102
TU111145 lncRNA upstream 561354 5942274 ~ 5945696 (+) True G75102
TU111138 lncRNA upstream 599523 5907179 ~ 5907527 (+) True G75097
TU111367 lncRNA downstream 26161 6542088 ~ 6544245 (+) True G75230
TU111374 lncRNA downstream 62245 6578172 ~ 6579929 (+) True G75236
TU111557 lncRNA downstream 128109 6644036 ~ 6650405 (+) True G75361
TU111558 lncRNA downstream 128109 6644036 ~ 6655910 (+) False G75361
TU111573 lncRNA downstream 219005 6734932 ~ 6759645 (+) True G75371
XM_043250140.1 mRNA upstream 965 6502318 ~ 6506085 (+) True golga7
XM_043249895.1 mRNA upstream 52005 6454065 ~ 6455045 (+) True LOC122352486
XM_043250695.1 mRNA upstream 60128 6422217 ~ 6446922 (+) True ppp3ccb
XM_043250696.1 mRNA upstream 60128 6422217 ~ 6446922 (+) False ppp3ccb
XM_043251208.1 mRNA upstream 101819 6385518 ~ 6405231 (+) True dmtn
XM_043250508.1 mRNA downstream 86450 6602377 ~ 6610875 (+) True letm2
XM_043251081.1 mRNA downstream 98103 6614030 ~ 6624214 (+) True si:dkey-81j8.6
XM_043249827.1 mRNA downstream 109505 6625432 ~ 6626598 (+) True prnpb
XM_043250756.1 mRNA downstream 465565 6981492 ~ 6993621 (+) True trpc7a
XM_043250022.1 mRNA downstream 547734 7063661 ~ 7076378 (+) True LOC122352574
TU111380 other upstream 34943 6454336 ~ 6472107 (+) False LOC122352486
XR_006251967.1 other upstream 417463 6061191 ~ 6089587 (+) True lrrtm4l1
TU111087 other upstream 944965 5560651 ~ 5562085 (+) True G75062
TU111017 other upstream 1006746 5498681 ~ 5500304 (+) False ccl19b
TU110943 other upstream 1248227 5256838 ~ 5258823 (+) True G74965
TU111650 other downstream 626366 7142293 ~ 7150581 (+) True G75422
TU111651 other downstream 637659 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other downstream 637659 7153586 ~ 7161263 (+) False LOC122352414
TU111639 other downstream 692608 7208535 ~ 7221528 (+) False LOC122353118
TU111640 other downstream 727340 7243267 ~ 7257229 (+) False LOC122353118

Expression Profile