RNA id: XM_043249828.1


Basic Information

Item Value
RNA id XM_043249828.1
length 2953
RNA type mRNA
GC content 0.43
exon number 1
gene id LOC122352413
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7134474 ~ 7137426 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTCTCTTGAGCAGCTGATATTTTGATCATTACAATCTGTTTTGTTAGGAATTAATCATGAACCCACTGTGCTAAGTTTGAATTGCTTTACGGATgtgctcatttatttatgcaatcGTTTATTTCACCGCttcaaaatgcttatttttattgttgtggaAACTGACGATATTTAAGATAGACCCATTAAACAAGTCCTTCTTTGCGTTTCTATTCTATTATATCGTGTAGGTGCGttgcaaaaaaatacactttacagagtttctgttttattatatcaGAAGCTTTTCTTGGAGTAACTTTAATACTTCGTTGCTATTCCGTTAAAAACCACCCGGAGCCGCTGGTAACCGTGACAATTTTGCAAGACCGCTATTACCGGCTCATTTGTATGTCTCCTCCTTTTGAAAGCACCAGTCTTAACCTTCTCGATGTCTTCAGCGGTCGTGTAGCGAACCACGTCCAGGCCGGTTTTGATCGTTTTggttcagtgtttatttatttggtttaaatcCTGAACGTTGGGTTTTAAGCCGAGATGAATCAGCGTGTCGGATCAGTATGGACTGCGTTTCTGCTGTCTTATTGCTGGACTTTATCTTCCGCTCAGATTGCGTATTCCGTCTCGGAGGAAGTGAATGTGGGAACCGTTGTCGGGAATATAGCAAAAGATCTTCACATCGGCGTGCAGGAACTGGAACCTCGCATGTTTCAGATTGTATATGGAGCCAACAAAAGGCATTTTGGGGTGAATGTAAAGACTGGGACCCTGTTTGTGAGTAATCGAATCGATCGAGAATCGCTCTGTTCTGCCGATCAGAAATGCACGGTGCTTTTAGAAGCAATGGCCCATAATCCATTGAGCCTGTACAGAATAGAGATGCATATAATTGACATCAACGATAACGCGCCGTCGTTTCCTACGAGCAGTCAGGTGCTCAATATAACTGAAGTCTCGTctcctggagagaaattttctCTTCCTTTGGCTGAAGATCCAGACTCGGGCAGCAATGCGGTTAAAACCTACAAGCTTAGTCCCAACGAGCACTTTTCTCTGGATGTGCAGACCGTAGAACACAGCGTCGCCGTCGAACTGGTCCTGATTAAAGCTTTAGATCGAGAAAAACAGCCTGTCGTTCATCTAACGCTGACTGCTGTAGATGGAGGGAGACCTGCGTTGTCTGGAACGTTAGAAATAACCGTCAATGTTTTGGATTTCAACGACAACTCTCCAGTTTTTAGCAAATCTCTTTACAAAGTGAAAGTGAACGAAAATATTGCTATAGGATCCCAAATCATCTCCCTTTCTGCTTCGGATTTAGATGAGGGGATAAATAGCGATATAACGTTTTCTATCGTTAAGCAAGGAGCCAGCAAAGCGTCCGATTTGTTTTCAATCAACCCCGACAGCGGACTTATAACGGTTAAAGATAATGTAGATTATGAAGAAAACGCTGCTGTGGAATTGAGGGTGGAGGCCAAGGATAAAGGCCACCCTCCTAAGAGTTCACAGTGTAAGGTGTTAGTTGAAGTAGTTGATGTTAATGACAATCCACCCGAGCTGACGGTGACTTCTCTGGCGAGCACTATTAAAGAGGATTCAAAAGTCGAAACAGCTGTGGCTCTTATCACGATCTCTGATAAAGACGGAGGTAAAAATGGAATAGTGCATTGCAAAATTATAGGTCAGGTGCCGTTTAAGATCCAGTCCTCGTATAAAAACTACTACTCTTTAGTTGTAGATGGACCACTGGACAGAGAAGAAATTACGAATTATAATGTCACTATAATAGCTTCAGACGAAGGGATTCCTTCACTCTCTAGTATCGGTGTTATCACAGTTCATATATCTGATGTGAATGACAACGCACCGCAGTTTCCAGTAGCTGCGAAGaacatatatttaaaggaaaatagTCCAGCAGGTGCCATTATAGAGACAGTGACTGCTCAGGATCCAGATGTCAACGAGAATGCTCGTATTTCGTATACAATATTTAGCAGAGACAAAACCGTCCTTCCATTAGTCTCTATGATCGACATAAATAGTGAGAGCGGAGACTTGTACAGTAAACAGTCGTTTAACTACGAAGACCTTAAGTCGTTTCAGTTTGTCGTTCAGGCCACAGACTCTGGTGTTCCTCCTCTGAGCAGTAACTcgactgtaaatgtgtttattctgGACGAGAACGACAACAGTCCGGTTATTTTAGCTCCTTATTCTGAACCTGGAtcagttaatagtgagaacatTCCCTACTCTGCTGAAGCGGGATACTTTGTAGCCAAGATCAGATCTGTTGATGCTGACTCTGGATATAACGCACTTCTGTCTTATCATCTAACTGAACCCAAAGGAACCAATCTGTTCCGCATCGGAAGCAGTTCTGGAGAAATAAGGACTAAGAGACGAATGAGTGACAACGACTTAAAAACTCACCCACTTCTCATCACAGTGTCTGATAATGGAGAGCCATCACTCTCAGCGACTATGTCCATGGATGTTGTGGTTGTTGAGAGTCTGGATGACATAAAGACATCCTTCCGAGAAGTTCCTGTTAAAGAGGAGAGTTTTTCAGATCTCAATCTGTATCTGCTCGTCTCTATCGTCTCAGTATCAGTCATCTTTTTACTGAGTCTGGTGGGTTTGATAGCAGCTAAATGCTACAGGACAGACAGCAGTTTCAGCAGGTACAGCGCTCCAGTGATCAGCACACATCCAGACGGAAGCTGGTCCTTCTCTAAATCCACTCAACAGTACGACGTGTGTTTTAGTTCAGACACGATAAAGAGTGATGTAGTAGTTTTCCCCTCGCCGTTTCCTCCAGCAGACGCGGACCTGATCAGCATTAATGGAGAAGATACTTTTACGCGCACGCAAACTCTTCCTACCTCAGAGAAGGTAAGACATTGTAACTTGCTTCGTACATTTCACTTCTCCTGCACCTGA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111609 lncRNA upstream 141266 6992839 ~ 6993208 (+) False trpc7a
TU111608 lncRNA upstream 148577 6981811 ~ 6985897 (+) False trpc7a
TU111573 lncRNA upstream 374829 6734932 ~ 6759645 (+) True G75371
TU111558 lncRNA upstream 478564 6644036 ~ 6655910 (+) False G75361
TU111557 lncRNA upstream 484069 6644036 ~ 6650405 (+) True G75361
TU111768 lncRNA downstream 227991 7365417 ~ 7366605 (+) True G75498
TU111791 lncRNA downstream 260619 7398045 ~ 7399363 (+) True G75513
TU111792 lncRNA downstream 262002 7399428 ~ 7400033 (+) True G75514
TU111794 lncRNA downstream 264707 7402133 ~ 7408121 (+) True G75516
TU111772 lncRNA downstream 350049 7487475 ~ 7488567 (+) True G75502
XM_043250001.1 mRNA upstream 546 7130736 ~ 7133928 (+) True LOC122352559
XM_043250021.1 mRNA upstream 3882 7127604 ~ 7130592 (+) True LOC122352572
XM_043249860.1 mRNA upstream 9215 7118582 ~ 7125259 (+) True LOC122352453
XM_043250041.1 mRNA upstream 16501 7113403 ~ 7117973 (+) True LOC122352586
XM_043250023.1 mRNA upstream 39898 7082972 ~ 7094576 (+) False fbxw11b
XM_043251046.1 mRNA downstream 1047 7138473 ~ 7140546 (+) True LOC122353133
XM_043251043.1 mRNA downstream 4877 7142303 ~ 7145149 (+) True LOC122353129
XM_043251037.1 mRNA downstream 12106 7149532 ~ 7152461 (+) True LOC122353121
XM_043249829.1 mRNA downstream 23420 7160846 ~ 7163223 (+) True LOC122352414
XM_043250984.1 mRNA downstream 25846 7163272 ~ 7196404 (+) False LOC122353116
TU111380 other upstream 662367 6454336 ~ 6472107 (+) False LOC122352486
XR_006251967.1 other upstream 1044887 6061191 ~ 6089587 (+) True lrrtm4l1
TU111087 other upstream 1572389 5560651 ~ 5562085 (+) True G75062
TU111017 other upstream 1634170 5498681 ~ 5500304 (+) False ccl19b
TU110943 other upstream 1875651 5256838 ~ 5258823 (+) True G74965
TU111650 other downstream 4867 7142293 ~ 7150581 (+) True G75422
TU111651 other downstream 16160 7153586 ~ 7161263 (+) False LOC122352414
TU111652 other downstream 16160 7153586 ~ 7161263 (+) False LOC122352414
TU111639 other downstream 71109 7208535 ~ 7221528 (+) False LOC122353118
TU111640 other downstream 105841 7243267 ~ 7257229 (+) False LOC122353118

Expression Profile