RNA id: XM_043249830.1



Basic Information


Item Value
RNA id XM_043249830.1
length 1090
RNA type mRNA
GC content 0.49
exon number 5
gene id and3
representative True

Chromosome Information


Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7862610 ~ 7865286 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


atgAGGCAGAAGGTGACGTCTGTGCTGTGCCTTTATGGGGCTCTGCACTGCTTGCTGTTTCTGCCAGTGTCGCGGGCAACGTCGTTAGCAAAAGTCTCCAAAGACAAAGCATCTAATCCAGCTGTCAGCATCGACTCTGAACATGCCCATGGTTTTCTGGCACACGCACGTTCGAGAAGAACAGCTGACCCCAACTGGTATCGCAGTAATCCAGACTTCCAGTCCTACTACCGTTATTACAACAGTATTGGGCACACTGAGGGGCTCTACGAGATAGACAGAATTCGAATGCTTTACCAGCAGATGCGACACCTGGAGCTCGCGTACGGACCTGAGGCGTCCAAATTCCAGAACACCCTCGGTCTCCAGCTAAAACCCACGCCTCCACCCACAACCCAGCCTCCACCCCCCACTTTACCTCCCGTCTCCAAGATGGACGTTATGTACCTGTGTAATTTAAAAGACCCCCAATGCAAGCCACATATAGTGTACCTGCCCGCCGGTGGTGTACCTGTCCTTTGCGATCCACGGTACCACCCAAACTGCAACCTCAGCCCTGTCCAGAAGCCGCTTTCTCCACCCGTAACTCCCTCAGAGCCGGTGACGTCAGACcctcctccaccaccaccaccaccacaaaaaaacaagccCCCTCCACCACCCCCTCCTCCAATGATTATGAAAGGAATGGAGTATGACTGTGATCCTTACTGGGACCCCGACTGCTTGATCGACAACCCTCCCAGGCCAGTTAAGATGATCGAACCACCACCAGCGCTGCCGGCTGAAAAGGGGAAAAAGGAAACGGACAGCAAAGTCATCCTAAACGCTCCAGTTCCAACCTACGACCCATATGACTTCAATCAAGATCTATATGATCCTTTCCGCCATGCAGCTCCCTGATATCAAATCAGTGAAAAAACGCATCTTCATAATTTACTCCTACATTTACGTTTTCTTATCAAAACCATGTAGCCTATAATTTATAAGATTATGTAGACGtcgcatattaaatatattaaaccgtgggcttttaataataattgtgttgCTAGATTTGTATTCTTTAGACAAAAATCTTGAGGCCAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU112019 lncRNA downstream 98757 7761525 ~ 7763853 (-) True G75667
TU112018 lncRNA downstream 101512 7760833 ~ 7761098 (-) True G75666
TU112005 lncRNA downstream 174637 7687694 ~ 7687973 (-) True G75654
TU111980 lncRNA downstream 246426 7609140 ~ 7616184 (-) True G75633
TU111847 lncRNA downstream 374043 7487473 ~ 7488567 (-) True G75549
TU112126 lncRNA upstream 232020 8097306 ~ 8099806 (-) True G75749
TU112151 lncRNA upstream 300162 8165448 ~ 8165708 (-) True G75767
TU112289 lncRNA upstream 349376 8214662 ~ 8221865 (-) True G75868
TU112290 lncRNA upstream 349376 8214662 ~ 8221865 (-) False G75868
TU112294 lncRNA upstream 365402 8230688 ~ 8260267 (-) True G75871
XM_043250867.1 mRNA downstream 2896 7851025 ~ 7859714 (-) True vamp2
XM_043250289.1 mRNA downstream 13423 7833109 ~ 7849187 (-) False per1a
XM_043250287.1 mRNA downstream 13423 7833109 ~ 7849187 (-) False per1a
XM_043250288.1 mRNA downstream 13425 7833109 ~ 7849185 (-) True per1a
XM_043251167.1 mRNA downstream 33026 7823409 ~ 7829584 (-) True pcolcea
XM_043250071.1 mRNA upstream 14922 7880208 ~ 7881971 (-) False si:ch1073-143l10.2
XM_043250070.1 mRNA upstream 14922 7880208 ~ 7881971 (-) True si:ch1073-143l10.2
XM_043250077.1 mRNA upstream 18056 7883342 ~ 7885481 (-) True rnasekb
XM_043250072.1 mRNA upstream 23920 7889206 ~ 7895138 (-) True LOC122352606
XM_043249884.1 mRNA upstream 30809 7896095 ~ 7897870 (-) True LOC122352481
unassigned_transcript_1472 other downstream 244 7862285 ~ 7862366 (-) True trnal-uag_2
unassigned_transcript_1469 other downstream 2307 7860222 ~ 7860303 (-) True trnal-aag_32
TU112043 other downstream 2902 7851021 ~ 7859708 (-) False vamp2
unassigned_transcript_1468 other downstream 177887 7684642 ~ 7684723 (-) True trnal-uag_1
TU111870 other downstream 318520 7530861 ~ 7544090 (-) True G75562
TU112044 other upstream 18620 7883906 ~ 7885482 (-) False rnasekb
TU112284 other upstream 308063 8173349 ~ 8285918 (-) False G75863
TU112282 other upstream 310741 8176027 ~ 8272958 (-) True G75863
XR_006252003.1 other upstream 409973 8275259 ~ 8275391 (-) True LOC122353467
XR_006251936.1 other upstream 654380 8519666 ~ 8527447 (-) False smtna

Expression Profile