RNA id: XM_043249837.1


Basic Information

Item Value
RNA id XM_043249837.1
length 3497
RNA type mRNA
GC content 0.53
exon number 17
gene id LOC122352422
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 12217090 ~ 12283587 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGAGGGGtacggggagagagagaggaggggggagATTGGTGGGAGGGGTCTGATATGGCAGACGTCACGGCTTGTGTAGGGGAGTATAGGCTGTGTTGTCAGCCTGGTGTCAGTCTGATGAAGATTGGCATTCAGACTGTCTGGAGGTCATTGCGCTGTCGGACCGGCTGCTGCAACTTCAGATGCCCCAATGCTGAGAACAAGCAAACTGATCTCCATGTGAAGCTATCCCATGATGCAACATGTGTCCCCTGCACCAGCATTGACCATGATGGCCACACAGAGCGTCCCTCCACCATCATACCAGGAGAGCCAACAGATGACAGGCACTACGCAGCAAAACTCAAAGGCCCAGCATGTCCACCTCTCTGCAGCCTCAGCGGCAGGGGCCACACAGGTCAGCGTGACCCTTGACCCCCAAGCCCAACTGGAGTCAGACAAACGAGCCGTTTACAGGCATcctctttttcctcttctgGCGTTGCTGTTTGAGAAGTGTGAACAAGCCACACAGGGATCCGAGTGCATCACCTCTGCCAGCTTTGACGTCGACATCGAAAACTTCGTCCACCAGCAAGAACAGGACCACAAGCCTTTCTTCAGCGAGGACCCTGAACTAGACAACCTGATGGTGAAGGCGATCCAGGTGTTGAGGATTCACCTGCTGGAGCTGGAGAAGGTGAACGAGCTCTGTAAAGACTTCTGCAACCGTTACATCACCTGCCTCAAGACCAAGATGCACAGTGACAATCTGCTACGGAACGACCTGGGCGGCCCGTATTCACCATCACAGACCAACCTCGGCCTGCAGCAGGATCTGCTCCAGAACTCACCCCCGTCCCTCACGTCTGTCTCCAGCACGGTAAACCCCTCTGGGATCGTGGTCCCTGCCGGTTCGCTGCAACAGAACAACGTTGCCATGACCACTATCAACTCTCAGGTGGTCTCAGGTGGGACGCTGTATCAGCCGGTGGCAATGGTTACCTCACAGGGGCAGGTGTTGACCCAGGGGTTACCGCAGGGAACCATCCAAATCCAAAACAATCAGGTGAACCTGGACTTGTCCTCACTCTTGGATGGCGATGACAagaaatcaaaaaacaaaagaggcgTCCTTCCCAAACATGCCACAAACATTATGCGTTCCTGGCTCTTCCAGCATCTCATGCATCCTTATCCTACAGAAGACGAGAAAAGACAGATCGCGGCACAAACAAATCTTACCTTATTACAGGTGAACAACTGGTTTATCAATGCCCGCAGGCGTATACTGCAGCCCATGCTGGATGCCAGTAATCCTGACCCTGCTCCCAAAGCCAAGAAGATGAAATCTCAGCACAGACCCACGCAGCGCTTCTGGCCCGACTCCATTGTAGCTGGAGTCCTGCAGACACACGGATCCCACTCCACAAACAATTCAGACAATTCTCTCGGCATGGACGGCCTGCAGTCTCTGTCCTCAGACTCGGCCACACTGGCCATGCAGCAAGCCATGCTGGGAGGAAACGAGGACTCCATGGACGGCACGGAGGAGGACGACGacgaagaggaagaagaggagggaATCGACGAGGAggaagacgaagaagaagatgaagaaatcGAGGGAGGCAGACAGATGGCTCGGAGAGATCTGGGCCTCAACCACAACGAAGGACTTGAATCCCAGTACAGCCTCTCATTTCGCTCAGACCTCCTCCGATACTTAAGATCCAGGCCAACATCCCTCTCCTCTCCAGCCTCAGGACCAGTTTACTGCTGGATTGATCCGCAATACATTCCTCTGCTGGATAAGGAATTCAAACCTTTAACCAGagaaatgtctttgttttcgTCCACAGCTGCCAGCATGTCTATCGCCAACACGGCCGCCCAGGCCATGCTCTCTGATGCCCTGCTGAGGGACAGTAATGGGGACAATCGCATTCGACACCTGGAGCTGGATTTGCCATTGGATAAAGTCATCAAATTCGTTTCCGTGGGCCTGCCGCTCCTTCTGGTGTCCATGGCCTTCGCCAGAGAGATTTCCATCGGCCCACAGATTAGCTGCTTTCCACCCAACAACTTCACAGTAAAGCAGGCAGCATATGTGGACACGTACTGCTGGGACTCTCTCATGCACCATGAGTTTGACACAGATGGGAACTTAGAAGAACGTTCACTGTGGGTACATAAAATGTTTCCATACTCCTTATTGGTCATGGCTATGATAATGTATCTGCCGGCTCTGATCTGGCGGTATCTGGCTGTGCCCagcctgacctctgacctgttCTTCATCATCGACGAGCTGGACAAGTCTTACAACCGCTCTGTCCGCCTGGCTCAAAGCATTCTGGACCTAAAACTGCATTCAGAAAGCCCACTGCAGTTTCAGGCTGAGCTTGAGAGAGCCAAGCGAAAGCGTTACTTTGAGTACCCCCTGCTGGAGAGATACATGCAGTGCAAGCATGGCTCCTACTTCCTGGTCAGCATGCTCTTCCTGCGAGGCTTCCTGCTCTTGACCTTCATGTCCGCCTCCTGCCTTTACCTGATCTACTTCCACCTCTCCGCCTTCCTGCAAGACGAATTCAGCTGCTTCGTACGCACGGGCCTCCTCCGCGACCAGCCCTGGGTGCCTGAGCTAGTTCAGTGTAAAATGACTGGCCTACTTGTGTTCCAGGTCATTAGCGTAGCTAACGGTGCCGTCTACGTGCTGCTAGCTCCTATTGTTCTCTTTAGCCTGCTGCGTTTGTTCTGCTGGGACACAACCTTCCTCTCCCTTTACGAGGTGCTGCCCGGATTGGGGCTCATGAGCGGTCAGAAACTGGGCTGCCCACTTAACGATCTCAACGTGCTGCTCCTCTTCCTGCGCGCCAACGTAGCGCAGCTGCGATCGTACAGCCGCCTGAGGGCCGTTTGCTCCCTGGCACCTCCTCGGCTGAAGGGTGCTAAGGGTGTGCTGACGGGGGAACAGGCCGAGGAAGCTGCGGAGGCCGCCGAGGAGCTCGAGGAGGAGATTAGAGAGGCCAGAGAGGAGGGCAAACTCAATCTAGTAGACATCATGACTGTGCTGGGAGCAGCCAGAGGAAACGCAGTGAACTGTTCAGAGCAGCGCCCTCTCGTGGAACAAGACATGACGCTTGGTACGGTCACTCTCATCTATATACTCAAACGCATCCTGCTCGTGGGCGTTTTCGTGGCCGTCATATGGGACGTCCAGAAAATCATCAAAGTGACTTAAACTTGCTGGAAATCATCTGTGTCCCTACTGAATGTGTGAAAATCATTTTACGTTAAAAATActcatatgtgaccctggaccacaaaatcagtcatgagtgtcatttttaaaatcgaGATGTATGCATCGCCAAAACAAGCTTTCCGTTAATGTACGGTTTGTTAATattggacaatatttggttgagatgcaaccattttaaaaaaaatcgaaatactgAGAAAAGAGCCTTTAAAGCTGCCCAGataaagtccttagcaatgcatattacta

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005921 gap junction cellular_component
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24891 PKNOX; homeobox protein PKNOX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113584 lncRNA downstream 450880 11701871 ~ 11766210 (-) False G76755
XR_006251968.1 lncRNA upstream 164955 12448542 ~ 12453651 (-) True LOC122353234
TU113766 lncRNA upstream 321632 12605219 ~ 12610098 (-) True G76902
TU113778 lncRNA upstream 394780 12678367 ~ 12678625 (-) True G76912
TU113780 lncRNA upstream 395420 12679007 ~ 12679218 (-) False uvrag
TU114135 lncRNA upstream 513077 12796664 ~ 12880735 (-) False G77135
XM_043249820.1 mRNA downstream 30994 12065931 ~ 12186096 (-) False opcml
XM_043249818.1 mRNA downstream 88187 12065931 ~ 12128903 (-) True opcml
XM_043250981.1 mRNA downstream 429417 11786410 ~ 11787673 (-) True lim2.1
XM_043250865.1 mRNA downstream 432937 11781496 ~ 11784153 (-) True bsx
XM_043250354.1 mRNA downstream 462889 11749965 ~ 11754201 (-) True zpr1
XM_043250808.1 mRNA upstream 27603 12311190 ~ 12430879 (-) False robo3
XM_043250810.1 mRNA upstream 27603 12311190 ~ 12430878 (-) False robo3
XM_043250811.1 mRNA upstream 27603 12311190 ~ 12430877 (-) False robo3
XM_043250809.1 mRNA upstream 27603 12311190 ~ 12430877 (-) False robo3
XM_043250813.1 mRNA upstream 27603 12311190 ~ 12377265 (-) False robo3
XR_006251915.1 other downstream 1009838 11176569 ~ 11207252 (-) False LOC122352715
XR_006251918.1 other downstream 1011863 11176569 ~ 11205227 (-) False LOC122352715
XR_006251917.1 other downstream 1011864 11176569 ~ 11205226 (-) False LOC122352715
XR_006251916.1 other downstream 1011864 11176569 ~ 11205226 (-) False LOC122352715
XR_006251914.1 other downstream 1011864 11176569 ~ 11205226 (-) False LOC122352715
TU113815 other upstream 498766 12782353 ~ 12789090 (-) True mogat2
XR_006251934.1 other upstream 1255142 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 1359704 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 1522532 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 1918675 14202262 ~ 14204127 (-) True G77440

Expression Profile