RNA id: XM_043249841.1


Basic Information

Item Value
RNA id XM_043249841.1
length 3732
RNA type mRNA
GC content 0.45
exon number 20
gene id umodl1
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 12807284 ~ 12817597 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATTTAGCAAATCAAAATGCATTGGGTTGTTGGTATTTGGTTAATTGTGTCTCTTCTCGGCCTTGGAATGGGGCacaacactttatttgaagGATATGACCGGACTCTATCAGGTTATCATCTGTGTAATATGACTGAGTCCGTGTCAGAGACCCATGTGGTCCCCTACACAACCTCGTACACCCAGAGGAAACCATGTGGTGGCTGGCTGCCATGGGCAATGTGTGATGTCACAGTTTATAAGACAGAATACCGAACACAGGTGTATGACATGCCCAAACAGGTCATGAAATGTTGCCGTGGCTATGAACAAGTTGGGAGTTACTGTGCCTTATCCttgaacagaagtgcagaattcACATCCAAGCCAGGACTGTGTCCCCCACCAAGAGAGAGAGGGTCTCGGTGTAATAATTCAGACTCCTCTGGCTCTGTGTGCAACCGGGACATTGATTGTCCTCAGTGGCAGAAATGCTGCCTAATCGAAAACACCTCCCCCATCTCTCAGTGCTTAGATCCAGTACCATCAGtCAACAGAACCTGGTGCTTCAATGTGACAATAACAGTTAAGACGACCTATGAGCTAGTTACCAGGGACAAAGGCCTCTTCAACCACACCAGACTGCTGCACTCTGTGGTAACCGGTGCTCTGGGAACTGATCAGATTTCTGTCCATCACATCTGGTCAAAATCAGCAGGACCCTTCACAACCTCTTCCTCACTGCTGGTTTGTTCTCCTAAAGCCATCTTACTGGcagacatttctgcaaaactgtaTCTGCTGGGAATCATTGAGGAGGTGACTAATGTGGTGGTGCAAGATGTGGATGAATGTGTTCCACAGTTGAACAGTTGTTCTCCACATGCAAGCTGCAGGAATACAGAAGGCTCTTATACATGCACCTGCCTTCCAGGCTATCAGGACCTCAACCTTTCACAACCAGGAACAGTTTGCACAGTTTCCAGTGCCACTGCACAACCTACACCACCAACCACCACCTCCATCACTACTCACTCTCCACCAGATAATAAAACTGATAGAGGACAAACGAGTCCCTCCTCGGCATCCACTGTTGAAACTTCTTCCTTCAGCCAAACTTTTTCTACATGTGGAGTGGCATATCAAGATCAAGACCActctaaaatgtgtaattttatcacACAGCACAATGCCACAGATGTTGCAAGTTTTGAGGAAGTGGGCAATTGGTGTTTCAGAGAATTTGGCAGTACATTCGACCGGCCTCACTACTGTAGACCACGTGTAACCATACCAGCCACATCAGCATCTTCACCTCCAGACTACACCCCCGTGATCATCAGCATCCTCTCTTATAATGTCACTGCATCATCCTTCCATGTGGCATGGACCACTGACATCCAAACCGGCGTCACCTTCGACCTGATTCTGCTAAACGGGAGcaaagaaatacaaaacttcGTAGTGAAAAGCTATAATTTAACATTCACAGACCTGAGTCCTGCTGTTCTTCATACTCTTCGTGTCACTCCAGTTGCCTGTGGTAAACAGGGAAACCCCACAGAGATCAAAGTGAGAACAGATGGTCTGTCTCTTGGAGCTTCAGCCCGTTTGAAAGGTGTAAATTATACAGAGGCCATGAAAGACCCAAACAGTGATGAATATAAGAAGTTCTGCAACAGTGTCATAAATGAGATTCTCTCATCCTTGCCTTCAAAGATCCATGCACTAGTCGTCTCTGGACAGGTCATCATCCAGATAACATCCCTCTCATCCGGCAGCGTAATCGTCAACTTTTCCATCATATTTCAACCCGGCAGCAGCATGAACATCTTAAGCGTGTCCAGTGCTCTGATGGGGTCTCTTCAGAACAGTTCCACATATGTAGTAGACGGTAACAGCATATACATAACAGATGCAGATGAGTGTTTCCTGGATAAGGCGGACTGCTCTCCGTGGGCCTACTGTAATAACACTTTTGGCTCATACACCTGTGTCTGTTGGTCTGGATACACAGACTTGAACCCCAGTAGACCAGGACGCAGCTGTGCAGCAATAATCCATCCCACTACAAACCACCCTGGAGTACCCTCTGATTCCACAGGCCCTACATCTTCCACCACCATCTTTGGAAACTCAACTATGAGCAGTACAGTGAGCACAACTCACGTCCAGCACAacacaacaacattttcaacttCCACAGCTGCTAATGGACCAAGAACAGTGATGCCGAACGCTCCTACAACAACACTTTCACCTATGAAACAAAACTCTCTCAAAACTACAACTTTCGGTTACCAGACATTAAACAGTCCACCACATTTCCTCCCCTACGTAGCTGTTGAGTGCATCCCAGGTTTTCTAACAGTTGTTGTACGGCGAGACTTCTTGCACAACTATAACATCCAAGAGAGTTCCCTGTACCTCGGTACACCAGAATGTGGTCTCAGCAGGGAAAATGCAACCCATGTGTGGCTCACTACATCTTGGGATACGTGTGGTACTAAACTAGCTCATaacAACACCCATAATTTAGCTAATGTGACTCTATATAACAGTGTGAGCAATGTTTTTACCGTGCGTCTGGAAGTTCCTGTCATTTGCTCCTACCCCAGAGGTGTCCTCATCTCCACGGGATACGCCCCCTCAGGGTATGTAGATATGATAAATTACCCAGTGGCAGGATCGGGTAGTTTCCAGGTTACTGTGCGACTGATGAATGGGACGATTCCTTTACCTGCCGATTACAGCCTCTCTCCTGATGACGAAATCACCGTCGAGGTTGGGGTCAACACTACTATCTCCCAAATCAAAGTTGTCATTGAAAAGTGCTGGGCCACTTCCAGCAGCGACTCATCAGAGTACCCCTACTATCTGTTTCAGGAACAAGGGTGTCTGGTGACAAACCCATATACAACCGTTCGTCAGAATGGAAATGACACTGTGGCTTTGATATCAGTGCGCATATTCAAAGTTGTAAATCTCTACACCATCTACCTGCACTGCCAGATCCAGATCTGTGTTGAAGTTCAGGACGGCACCTGCAAACCTTCTTGTATGAGGACATTCAGGTCTTCTAACATAGCCGGAGTGAAACAGGCTACCGTTGGACCCATAAAGAGAATACCTTCAAGTAAATTCTTCTCAGATACATCGAGTACTCTGCAGACTGTTGGATTTATTCTGCTGGGTGTTGGGGTGTTTGTGTTTTCCCTGGCTGCCGTCGCAGGACTGGCGTATCATAAAAGGAAAATCGGCAACTACAATTTCCGATGTAAACCACAGCAGCAGAACTTCACTTATCATGTTTTTGACACCTAACTGCAGTCAAATAGTTAACTGTAGCTTTAAACtggtcattttattattagattttactAATTGGCCCAGTATagagaaaattaagaaatgttttagaGAAATGGATTtgactatattttttttaaaagaacgtttttttttttttttttatcagcactTCAAGATACATACAGGGTGTATATAAAGGCCTTAAGCATGTCTTTTACGCTGTTGGGAGGGGTTgccatttttaagaaatcataTTTTCGTTTTAAAATCTGCACACATTCCTGTTTGTAGTCATATTCCTTGCCAGTCATATTCATGCATACAAGATTTCACGAATTTGCATAAACTGGATGTAATTGTTGATCGTTTGACTCTTCTTTTAAAACcgttatgaaatattaaaaaaataagcggCTTACATCTTACCTTGGAttgtttcac

Function

GO: NA

KEGG:

id description
K24499 UMODL1; uromodulin-like 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113780 lncRNA downstream 128066 12679007 ~ 12679218 (-) False uvrag
TU113778 lncRNA downstream 128659 12678367 ~ 12678625 (-) True G76912
TU113766 lncRNA downstream 197186 12605219 ~ 12610098 (-) True G76902
XR_006251968.1 lncRNA downstream 353633 12448542 ~ 12453651 (-) True LOC122353234
TU113588 lncRNA downstream 1041074 11761717 ~ 11766210 (-) False G76755
TU114128 lncRNA upstream 56954 12874551 ~ 12878653 (-) True G77135
TU114167 lncRNA upstream 204056 13021653 ~ 13103059 (-) True G77153
TU114171 lncRNA upstream 216144 13033741 ~ 13035585 (-) True G77157
TU114230 lncRNA upstream 393019 13210616 ~ 13210946 (-) True G77208
TU114244 lncRNA upstream 495597 13313194 ~ 13315574 (-) True G77220
XM_043249974.1 mRNA downstream 18189 12782899 ~ 12789095 (-) False mogat2
XM_043250875.1 mRNA downstream 27495 12771426 ~ 12779789 (-) True dgat2
XM_043250579.1 mRNA downstream 37867 12679737 ~ 12769417 (-) False uvrag
XM_043250581.1 mRNA downstream 37868 12678990 ~ 12769416 (-) False uvrag
XM_043250580.1 mRNA downstream 37868 12685355 ~ 12769416 (-) True uvrag
XM_043250185.1 mRNA upstream 9325 12826922 ~ 12828717 (-) True atg101
XM_043250186.1 mRNA upstream 9325 12826922 ~ 12828632 (-) False atg101
XM_043251197.1 mRNA upstream 66603 12884200 ~ 12900007 (-) True trim37
XM_043250453.1 mRNA upstream 83455 12901052 ~ 12908439 (-) True rabgef1
XM_043250452.1 mRNA upstream 83455 12901052 ~ 12908393 (-) False rabgef1
TU113815 other downstream 18194 12782353 ~ 12789090 (-) True mogat2
XR_006251915.1 other downstream 1600032 11176569 ~ 11207252 (-) False LOC122352715
XR_006251918.1 other downstream 1602057 11176569 ~ 11205227 (-) False LOC122352715
XR_006251917.1 other downstream 1602058 11176569 ~ 11205226 (-) False LOC122352715
XR_006251916.1 other downstream 1602058 11176569 ~ 11205226 (-) False LOC122352715
XR_006251934.1 other upstream 721132 13538729 ~ 13543615 (-) False sparta
TU114352 other upstream 825694 13643291 ~ 13654379 (-) False ypel2a
TU114409 other upstream 988522 13806119 ~ 13807640 (-) False ovca2
TU114554 other upstream 1384665 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 1384665 14202262 ~ 14202837 (-) False G77440

Expression Profile