RNA id: XM_043249843.1


Basic Information

Item Value
RNA id XM_043249843.1
length 2353
RNA type mRNA
GC content 0.35
exon number 2
gene id LOC122352428
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 14011544 ~ 14014981 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGTCAGTCAGAAGGGACTGACTGCTCTTCATTCAGTATATAATGAATATGGGAAAGGCTACAATCCCTGCAAACCACCCAAAGACCTTACTTTCTTTATCACAGGTAACACAACATTCCAGACCACAGGCAGCTTGACTTCAGTGCAGTCAAACTCCTCTGCAAATGTGACCTTTGTTCGTCCTGCAACATTCTTCATCAGTGGCTTTTCTAATTTCTCACATGCAAAATACTactatgtgtttttgtgttttgtatatgTTGTGACCATTTTGGGGAATTTATTTATCATGTGTACTATTTTATTGGCCCGCAGACTCCACACAGCCAAAtacattgctgtttttaatctGGCGCTTTCTGATCTGTGTGGAAGCTCAGCTTTGATTCCAAAACTCATAGACATGTTTTTATTCGAGCACCAGCTCATTTCATATGAAGCGTGTTTgatgaatatgttttttgtgtttcattttatgAACATTCAGTCTTTGACACTTCTCGCTTTGGCTTACGACAGACTGGTTGCTATTTGTTTTCCTCTGCGGTATCATgccattattacaaaaacatccaTGTCACTTCTTATAGGAAGTATGTGGATGTTTTCCATGGCTTTATTTGCTGTACTCGTGGGATTAGTCAACAGACTCTCTTTTTGTAGATCTACTGTGGTGAATAGCTATTTTTGTGACCATGGCCCTGTCATCAGCCTTTCCTGTAACAATAATGACATAAATTACCTCCTGGCGTATATTTTTTTCGGTCTTCTAATTTGTCTGCCGGTGATATTGATAACCCTCTCGTATTGTTGCATTGCTGCGGCATTGCTGAAGATCGCTCATGGTGCTGATCGCATCAAAGCCATGAAAACATGCACCTCACATCTTGTGTTAGTGGCAGTTTTTTATCTCCCAATTTTAGGTGTAAATGTTAAATCGATCTCAACATCTATTGATCAAAACTCCCGGATAATTAACACTTCCCTGACACAGACAGTACCACCTATGTTGAATCCCATCATATACACTCTAAAGACAGAGGAGGTCATGCAATCCATAAAAGACCTGTACAAACGATACAAGGTGAGCactattacagaaataaatgtgaaacagagaatgtaaatataagctcttgatatttcacattttgtccttaacgtttttgtttaataattgtatgaaaagaaaatggcatGTCGTTTGTTGCATATAAATAACAGACAAgctatataattataatgtactTTAACAAACATtcacttattatattattataaaataattgttcaaCTTCCTCATGTGTGATTACAATTTAACATCAcagtgtttaaataataataataaaaactgcacagatttttttgttgcttttttgttgtcatttccACTGACACCACTAAGGtagttttattgcaaaatatgatttaaattaaatttcaaggTTGTTTCAACAACGGCttaatgtaaattacatttgtatGAAAAAATGATGACATATGTTTTGATGTACATTGTCAAAGCTCATAAGAAAAGGCATTCAACTAGTCATTCAACCCTAAGGTGACATTTAGAGAAGCaaagtcaaatatttaaagGGCTAGCATATCCTGATATTGCTGAGTTCTATGTGTTCCTGGAGcattttattccaaatatttaatttgaccatatctctacacctaaaccttaCACATTAGTACTGcttaaaatcagaggaaatgatgacactgccgtacaagcaccaaacactgactgCAAGCCCAAACTTGCAACAACACAGTGTAAGTAAAGAAGGTCAAATATAGgtaaaaaggttaaataaagCTTCTTTAAAAGAGCAAAGTACTAAATCACAAAGACGGAACTACCAAGAATGGTACGTATTATTTGCATGTTGGCATCAGCTTTCCTGACATAATCATACACTGTAAATATGCAGCATGTGAATTACACTTTACAACTTTAGGCCTACATTTGAAATGAGAAGGCCTTCAGTGGATCAACAGCTTTCAAAGGATTCTGCAGTTTAACCAGGGGGAATTTATTTGCAAGTGATGCTATTGAGAATTTTGGTTTTGATCAAAGATCAAACATCCTTTGCCTATCTGGACCCGTTGATATTGTCTAGGATGAATGAACAATTGAGAATTTAACTATTTCTCATGTTcgataaaatcaaatcaaataaatacaaataaatatggaCGGTTCTTAATCGCGCCAAGCGTATCACATATcataaatacttttgaaaacatATAGTACTGTTGCTTCACAGTAAGAGAAagcatataaatgttttttttttaatgaggacATATAATAGAGTGATACGTAGGGCGCACTT

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114455 lncRNA downstream 16777 13994422 ~ 13994767 (-) True G77379
TU114454 lncRNA downstream 24378 13986935 ~ 13987166 (-) True G77378
TU114408 lncRNA downstream 206215 13805089 ~ 13805329 (-) True G77352
TU114407 lncRNA downstream 206652 13804483 ~ 13804892 (-) True G77351
TU114402 lncRNA downstream 210632 13800013 ~ 13800912 (-) True G77347
TU114469 lncRNA upstream 44458 14059439 ~ 14097135 (-) True G77390
TU114468 lncRNA upstream 61328 14076309 ~ 14097135 (-) False G77390
TU114539 lncRNA upstream 129910 14144891 ~ 14145304 (-) True G77432
TU114587 lncRNA upstream 276872 14291853 ~ 14292718 (-) True G77456
TU114604 lncRNA upstream 346373 14361354 ~ 14361734 (-) True G77472
XM_043250045.1 mRNA downstream 203725 13806104 ~ 13807819 (-) True ovca2
XM_043250168.1 mRNA downstream 224882 13773844 ~ 13786662 (-) True smg6
XM_043250372.1 mRNA downstream 253285 13754169 ~ 13758259 (-) True si:ch211-244c8.4
XM_043250908.1 mRNA downstream 301096 13699234 ~ 13710448 (-) True gabrr3a
XM_043250276.1 mRNA downstream 327407 13681141 ~ 13684137 (-) True rhbdd2
XM_043249845.1 mRNA upstream 1656 14016637 ~ 14017638 (-) True LOC122352429
XM_043249846.1 mRNA upstream 7854 14022835 ~ 14023833 (-) True LOC122352430
XM_043250877.1 mRNA upstream 11704 14026685 ~ 14027683 (-) True LOC122353045
XM_043249847.1 mRNA upstream 15170 14030151 ~ 14031155 (-) True LOC122352431
XM_043249848.1 mRNA upstream 20354 14035335 ~ 14036324 (-) True LOC122352432
TU114409 other downstream 203904 13806119 ~ 13807640 (-) False ovca2
TU114352 other downstream 357165 13643291 ~ 13654379 (-) False ypel2a
XR_006251934.1 other downstream 467929 13538729 ~ 13543615 (-) False sparta
TU113815 other downstream 1222454 12782353 ~ 12789090 (-) True mogat2
XR_006251912.1 other downstream 2806318 11176569 ~ 11205226 (-) False LOC122352715
TU114554 other upstream 187281 14202262 ~ 14204127 (-) True G77440
TU114555 other upstream 187281 14202262 ~ 14202837 (-) False G77440
TU114556 other upstream 189435 14204416 ~ 14208006 (-) True G77441
TU114559 other upstream 219525 14234506 ~ 14264322 (-) True G77443
TU114597 other upstream 325065 14340046 ~ 14343012 (-) True G77465

Expression Profile