RNA id: XM_043249857.1


Basic Information

Item Value
RNA id XM_043249857.1
length 1713
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC122352450
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 15111412 ~ 15115448 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGACAGGAAAATGGAAGCCTTGAGCACCAAAACCAAGACCAGAATAGGGTTTTGGAACATACGGACGATGTACCAAGCAGGAAAACTGGCGCAAGTGACATCAGAGATGCGTCGATACAGTCTGCACATGTTAGGCGTTAGTGAGACGAGATGGACAGGAtacggaaaaaaaacaacatcaacagGAGAGACCATACTCTATTCAGGCAGAGAGGATGACCAACATGAGGAGGGAGTTGCCATCATCTTGAAGAGAGGAACAGAGAAAAACATGATTGAATGGAAACCTGTCAATAGCAGACTGATGAAAGTGAGGATGAAAGGGAGACAAGTAAACATGACAGTCATTCAGTGCTACAGTCCAACAAATGACAGCGAGGATGAGAGGAAAGACCTTTTCTATGAACAGCTGGATGCTGAAGTCAAGTAAACACCAAGGCATGACCTTTTGATTGTCATGGGAGACCTCAATGCAAAGGTTGGCAATGACAATACCAACAACGAGCGAGCAATGGGCAAGCATGGCTGTGGGATAATGAATGAGAACGGAGAAAGGCTCATTGACTTCTGCAATACCAACAACCTAGTTGTGGGAGGCACCTTGTTCCCACACCGTGACATCCATAAGCTGACTTGGTACTCACCAAACGACAGGGACAGGAACCAAATTGACCACCTGCTGATCAACGGAATGTGGAGAAGATCAATTTTGAATGTCCAGGTCAAGCGAGGAGCCGATGTTGCAAGTGATCACCAACTTGTTACAGCTATGTTGCTACTGAAACTGAGAAAAGCAGAGAACAAGACCCATACTACAAGAAGACTTGACATCCAGAAACTTAAAGATCCCCGCATAAGACACAACTTTGTTCTACAGGTCAAGAACAGATTTCAAGCACTGCAGGATCTGGAAACAGAAGTCAGAGTTGACAAGATCGACTTAACATATGAAAACATCAAGAATGTCTATCAGAAGAGTGCAGAAGAGAGTCTTGGATACAGAAccaagaaacagaaaaaggatTGGATCAGACTGAGCACATGGAAAGCCATAGAGAATAGAAGGAAACTCAAGAACCAGCTGATGAACACAAAGTCAGAAAGGCTATTAGAGAGATACAAGCAGCAATACAGAGAGTCCAACAAGGAGGTGAAGAGGAAGTTCAAGACAATTTGGACTTCAGCAACTATACCTGAGGAATGGACCAAAGGTGTGATCATCAAAATTCCAAAGAAGGGCACACTCAGCGACTGCAACAACTGGCGAGGCATCACCCTTTTATCCATCCCTAGCAAGATCCTGGCCAAGGTAATCATCAAAAGGTTATCGAAAGCCGTGGACGCAGAACTGAGAAAGGAACAAGCTGGATTTAGAGCAGGGAGGAGATGCACAGAACAGATTTTCGCTCTGCGTAACATCATAGAACAGAGTGCagaatggtgtctTCAGCTTTATGTAAACTTCATTGACtttgaaaaagcatttgacAGTGTGCACAGAGACAGCTTGTGGCGAATCTTGAGGGCCTATGGAATACCGTATGACATGGTAAAGCTGATCAGGAGTTTCTACAACAACTACAGCTGTTGTGTGGGAGGAAGCGACATCTGGTTTGAGGTAAAAACTGGGGTCCGTCAAGGCTGCGTGATGTCCGCTCTTCTCTTTAACTTGGTGATAGACTGGGTGAtgatttctttatattttgattaa

Function

GO:

id name namespace
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114876 lncRNA downstream 7843 15102149 ~ 15103569 (-) True G77669
TU114743 lncRNA downstream 521532 14588406 ~ 14589880 (-) False vwa3a
TU114679 lncRNA downstream 613958 14495498 ~ 14497454 (-) True G77514
XR_006251945.1 lncRNA downstream 646092 14460368 ~ 14465320 (-) True LOC122353010
TU114626 lncRNA downstream 685925 14424513 ~ 14425487 (-) True G77480
TU114879 lncRNA upstream 23159 15138607 ~ 15139007 (-) True G77672
TU114881 lncRNA upstream 40901 15156349 ~ 15156591 (-) True G77674
TU114883 lncRNA upstream 44017 15159465 ~ 15159847 (-) True G77676
TU114900 lncRNA upstream 158465 15273913 ~ 15276004 (-) True G77692
TU114908 lncRNA upstream 229552 15345000 ~ 15347289 (-) True G77700
XM_043250046.1 mRNA downstream 482338 14620986 ~ 14629074 (-) True si:ch211-256e16.3
XM_043250047.1 mRNA downstream 492802 14611801 ~ 14618610 (-) True LOC122352591
XM_043250050.1 mRNA downstream 500189 14591019 ~ 14611223 (-) True mosmoa
XM_043250015.1 mRNA downstream 521517 14568330 ~ 14589895 (-) False vwa3a
XM_043250016.1 mRNA downstream 521517 14568330 ~ 14589895 (-) True vwa3a
XM_043250334.1 mRNA upstream 117693 15233141 ~ 15289672 (-) False LOC122352744
XM_043250333.1 mRNA upstream 117693 15233141 ~ 15289672 (-) True LOC122352744
XM_043249858.1 mRNA upstream 190087 15305535 ~ 15306408 (-) True LOC122352451
XM_043250086.1 mRNA upstream 192451 15307899 ~ 15314674 (-) False LOC122352614
XM_043250085.1 mRNA upstream 192454 15307902 ~ 15315868 (-) True LOC122352614
TU114878 other downstream 3660 15107137 ~ 15107752 (-) True G77671
XR_006251888.1 other downstream 521513 14569361 ~ 14589899 (-) False vwa3a
TU114673 other downstream 626142 14484817 ~ 14485270 (-) False im:6904045
XR_006251944.1 other downstream 629963 14467186 ~ 14481449 (-) False LOC122353009
TU114670 other downstream 629975 14474120 ~ 14481437 (-) True LOC122353009
XR_006251922.1 other upstream 114521 15229969 ~ 15289672 (-) False LOC122352744
TU114910 other upstream 242237 15357685 ~ 15358232 (-) True G77702
TU115089 other upstream 778235 15893683 ~ 15897098 (-) False npffr1l1
TU115119 other upstream 901223 16016671 ~ 16017770 (-) False LOC122352931
XR_006251960.1 other upstream 915079 16030527 ~ 16057307 (-) False cabp1b

Expression Profile