RNA id: XM_043249866.1


Basic Information

Item Value
RNA id XM_043249866.1
length 1056
RNA type mRNA
GC content 0.39
exon number 1
gene id LOC122352458
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 15705225 ~ 15706280 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAAAGGACAGACAGAAGAGCAAAGCAGACTCATAACAGGAGGAGACTCACTCATGGCCTATGAGACAGGCCTATGCTTTCCTGCCATCAACTCTTCATGTATGAAAGGCAAACGCTCCAGACATGAATATAATatcatgtatgtgtttttttcattgctgtcagcatggactgtgtttctgaatctgctggtgatcatctccatctctcacttcaAGAAGCTTCACACTCCAACCAACCTgatcattctctctctggctgtggCCGACATACTTACTGGACTTATTGTTATGCCTTTGGAGGCCATTAAACTGATTGAGACGTGCTGGTACTTTGGCAATACTGCCTGTGGACTGTTTACTATTACCCTTGGTGTGATTATTTCAGCATCTCTTAGTAATTtggttttaattgctgttgatCGTTATGTGGCTTTGTGTCACCCTTTACGGTATCCacagaaaataaccaaaaccaAAACCTTAATGACCATCTGTCTCTGCTGGTTTTGCTCTTCAGCTTATATAAGTGCCCTTTTTTGCAGCAACAGACGTTCTGACTCTTCAGACAAAATAGATGTGTGTTATGGAGAGTGTTCTTTCATGATGAGTTTTACATGCACAGTCATTGATCTGTTTGTGTCCATGCTTCTTCCTTCTACCCTGATCATAGCTTTATATTTGAAGATATTTCATGTTGTACATCAGCAAGTAAAAGTTATAAACTCTCTGAGGAAGGGCGGTAAACGTGTAAGGGAGGATTTGGTGGGGAGAAAATCGGAGAGAAAAGCTGCTTTCACATTAGGAATCATTGTAGCAATTCATCTTCTCTGTTGGTTACctctctatattttttttctggcagGGAATACAATGATGTCTTCTGTAATAGTGAATTTTCTAAGATGGGTCTACTATATTAACTCAGGCCTAAATCCTCTTATCTATGCTTTATTTTACCCTTGGTTTAGAAAATCAGTTACATGCATTCTATCACTGAAAATAGTTCAACCAGCATCTTCTCTGGTggacattttttcaaattattactcataa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114936 lncRNA downstream 57362 15644403 ~ 15647863 (-) True G77715
TU114914 lncRNA downstream 310673 15392088 ~ 15394552 (-) True G77706
TU114911 lncRNA downstream 336549 15368401 ~ 15368676 (-) True G77703
TU114908 lncRNA downstream 357936 15345000 ~ 15347289 (-) True G77700
TU114900 lncRNA downstream 429221 15273913 ~ 15276004 (-) True G77692
XR_006251906.1 lncRNA upstream 120804 15827084 ~ 15827556 (-) True LOC122352661
XR_006251889.1 lncRNA upstream 124927 15831207 ~ 15831926 (-) True LOC122352573
XR_006251904.1 lncRNA upstream 133233 15839513 ~ 15840066 (-) True LOC122352641
XR_006251891.1 lncRNA upstream 134071 15840351 ~ 15842537 (-) True LOC122352598
XR_006251965.1 lncRNA upstream 196607 15902887 ~ 15912782 (-) True LOC122353197
XM_043249865.1 mRNA downstream 7547 15695420 ~ 15697678 (-) True LOC122352456
XM_043250901.1 mRNA downstream 20932 15683271 ~ 15684293 (-) True LOC122353069
XM_043250840.1 mRNA downstream 342949 15347467 ~ 15362276 (-) True mafga
XM_043250839.1 mRNA downstream 343403 15347467 ~ 15361822 (-) False mafga
XM_043251064.1 mRNA downstream 363260 15316648 ~ 15341965 (-) True LOC122353145
XM_043250904.1 mRNA upstream 7101 15713381 ~ 15714427 (-) True LOC122353072
XM_043250883.1 mRNA upstream 10504 15716784 ~ 15717845 (-) True LOC122353050
XM_043250919.1 mRNA upstream 15075 15721355 ~ 15722425 (-) True LOC122353087
XM_043250910.1 mRNA upstream 24255 15730535 ~ 15731590 (-) True LOC122353079
XM_043249870.1 mRNA upstream 61656 15767936 ~ 15768934 (-) True LOC122352466
TU114910 other downstream 346993 15357685 ~ 15358232 (-) True G77702
XR_006251922.1 other downstream 415553 15229969 ~ 15289672 (-) False LOC122352744
TU114878 other downstream 597473 15107137 ~ 15107752 (-) True G77671
XR_006251888.1 other downstream 1115326 14569361 ~ 14589899 (-) False vwa3a
TU114673 other downstream 1219955 14484817 ~ 14485270 (-) False im:6904045
TU115089 other upstream 187403 15893683 ~ 15897098 (-) False npffr1l1
TU115119 other upstream 310391 16016671 ~ 16017770 (-) False LOC122352931
XR_006251960.1 other upstream 324247 16030527 ~ 16057307 (-) False cabp1b
unassigned_transcript_1473 other upstream 412506 16118786 ~ 16118856 (-) True trnag-gcc_65
unassigned_transcript_1474 other upstream 412672 16118952 ~ 16119022 (-) True trnag-gcc_66