RNA id: XM_043249899.1


Basic Information

Item Value
RNA id XM_043249899.1
length 4683
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC122352490
representative False

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 16146436 ~ 16169814 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGACtcttttcaatttttattgaaaagttACGCGCAATATTTCAACGCCCGCGTAGTAGTAGTAGCAAGGTTAAGCTTTTTTTTGGGCTTTCAGACACAGCCCAAAGCTTGTTGAGTCAATCTGAAAACGGCGTTAGTCGAAGATGAGGTCTGCTCATTTCCCACAGTCCCTTGCTTCGCTCCTCGGCGCATGCTGCGCATTTCTTTGGCCCGCAGCTGGCTGTGACTCCATCAGGTTGCTAGGCAGCACACTTCTAATGCGGAGAAGAGGCGGATCTTCACGGGCCGCTGCAGTATCCCAATGAATCctcctcagccaatcagagcacagcaTAGGAGCATTTCCTGCACAGGAAAGCCCACACTCGCTCTCTTTATCTCACTTTCCCTTTGACTCCCTCCTCCCGACTCTCTGTATTCATTGAGCTCTTGTATAAAGGAAGAACTCTGTTCTGAAAGtcagttttgttcttttaaatcagATGTCAGAATGGCGAAGTGCCTCAAATGGAGATGAACATCTACCGGATACTGTCTGATGAGCGTAAAAGGCTGTTTCACTGACTTCCACATCGACTTTGGCGGCACATCGGTATGGTACCACGTCTTCAAAGGAAGAAAGGTCTTCTGGCTGATTCCCCCAAGCCCAAACAATCTGTCTCTGTACGAGGACTGGGTGCTGTCAGGCAAACAGAGCGATATCTTCCTGGGTGACCGTTCAGACGGCTGCCAGCGAGTGGAGCTGAAACAGGGCTACACCTTCTTCATCCCTTCAGGTTGGATCCATGCCGTCTACACTCCAGAAGACACCCTGGTGTTTGGCGGGAATATTTTACACAGTTTCAACATTCCCATGCAGCTCACCGTCTACGAAATTGAGGACAGAACAAAGGTGCACTCGAAATTCCGCTACCCTTTCTTCTATGAGATGTGCTGGTATGTGTTGGAGAGGTACGTGAACTGCTTGACCAGACGTTCGCACCTCAGCCTGGAGTTCCGCGTCCACGCTGCTGAACCCAAGCTTGTAACCGAGAGTCTCGTCTCTGCACCTCGGCTGGACATGGAGGAGGACTCATGTGAGATGCGGTTGGAGAGGACAGAGGGGACGACCCAGCCGTCCTCCACTGTCCCTCCCTATCAGACCTTCAAGTCCCCGGCCAATGATTCTGAAGACAGCTTCAAGTCCCTGCCTTCTGAGTGTCCCAAGACTCCGTCTGGCTCACCTGGAATGGAACATTCCGGCAAATGGACACACTTGACAGAGTTTGAACTAAATGGACTCAAGGCCTTGGTGGAAAAGCTGGAATCCCTTccagagacaaaaaaaagtgttccagAGGGCATCGAGGACCCACAAGCACTGCTAGATGATGTGAAGGTTGTATTAAAGGAACACGCAGATGACAATCCAAAGTTGGCCATTACTGGTTCTCCTATTGTATGCTGGCCAAAGAAGACAGGCAAGCCACGGCCACTTAATCGGCCAAAAACAAAGATGGGCTCGTCTCCATCGGCTGCTCCAGGCTCGACAGCGGGAGGAGTGAAGCTCTCATCCAGTCGCGGTTCATCTAGTGCCCGGCGCAGACGGACACGCTGCAGGAAGTGCGAGGCATGCACACGCAAAGAGTGTGGAGAGTGCCACTTCTGCAAAGACATGAAGAAGTTTGGTGGACCAGGCCGCATGAAGCAGTCCTGTATCATGAGACAGTGCATAGCGccTGTTCTACCTCATACTGCTGTGTGTCTGGTGTGCGGAGAGGCTGGGAAAGAAGACACAGTAGAGAATGAGGAGGACAAGTTCAACATGATGCTTATGGAGTGTTCTATCTGCAATGAGATCCTCCATCCAGGATGCTTGAAGGACAAGGATTCTGGTGGTGTTGTAAATGATGAGTTGCCAAATTGCTGGGAGTGTCCGAAATGCAATCATGCTGGAAAGACAGGGAAAGTCACAAAGCAAAAAAGAGGCCCAGGGTTTAAGTACGCTTCTAATCTCCCTGGCTCTCTGCTCAAAGACCAGCGAATGATCCGGGATGTAAAGGAAGAGCCGGAATCAAACATGTCTACAGAGTCCTACACCTCTACTGTTTCACCTGTCATGAAAAAGATGACAGAACGAGAGGACAATCCTATCTGCAAGTCAGAAGACGCCTTTAAGACACGTTCCAAATTGGAGGACAACCCACTCCGCAAGAAGAGAAAACTCTTTGAAAAGGACTCAGACTCAGATTCCAATGTCAAGAAAAAGAAGAAGCACTCAAAGCCTGAAGATCTCTCAACCTCTATTGTCCTGGGACagataaagacagaaagagaggatGATGAGGAGTATGATGAGGAGAACAGACAAGAATTGGAGAGGAGAGCCTTCAGTTTTGTGCCCTCAGAAGAAGAGGATGGagatgatgaagaagaggaagaagaagagactATGAATGAGAAGAGTAGACGAGACGAGAATGGGAAGCTTGTGCACAAGACCTCTGCTGCATGGGGAGGTGACCAATCACAGGGCGGTCTTACCCAGGCGGGGCCCAGCAGTGACCCGGGTGTCGATACACAGTTGAGGAACCAGCGAAAAACCAAACGCAAACCTCGCCTGCCCAACAAAGAACTGAGCAAAGAATTAAGCAAACAACTCAATCAGGAGATCCAGAAGACAGAGGACTGTCTGGCTCATCAAAATGGCAGAGCGATGAAGACAGAACCAGACAGTGATGGAGAAGACAGAAAACCACTAAGGAATGGCAGTAGCCATCTGAGAGACTGGCTAGGACCTAAGCGGGAACTAAACGGATCCTTCAGGGAGCAGGTCCCGGTTAACTGGATCAGGACTACACCTACCCCAGTCATTAGGCCAACACCTTGTCGCTCTCCACCAAAATGTGTTCAGATGGAGCGCCATGTTATTCGCCCCCCTCCAATTAGCCCCCCTCCAGATGGGCTGCCCTTAGATGACGGGAATAATCATGTAATGCGGAGAGAGGTGTGGATGGCAGTGTTCAGCCACCTCACACACCAAGACCTCTGTGTCTGCATGCGGGTCTGTAAGACCTGGAACAGATGGTGTTGTGATAAAAGACTGTGGACCAAGATCAATCTGAACCGGTGCAAGTCAATCACTCCACTCATGCTGAGCGGCATTATCCGCAGACAGCCGGTCTCCCTGGACCTGAGTTGGACTAACATCTCTAAGAAGCAGCTCAGCTGGCTAATCAACAGATTACCTGGTCTGAGGATTCTGTTGCTGGCAGGCTGTTCGTGGGCAGCTGTATCAGCACTATGCACATCCAGTTGTCCTTTGCTAAGAACTTTAGATGTGCAGTGGGTAGAGGGCCTCAAGGACAACCAGATAAGAGACTTACTCTCTCCACCGACAGACAACAGACCAGGTCAGTTGGACAGTAGAAGTAAACTGAGAAACGTGGAGAATCTTTGTCTAGCTGGTCTGGACATCACGGATACATCCCTCAAGCTGATGATAAAACACATGCCTTCACTGTCCCAATTGGACCTTAGTTACTGTAACCACATCACCGACCAGAGTGTGAATATCCTTACAGCAGCCGGCACCTCGACCAGAGACTCTCTTACTCACATCAACCTTTCAGTTTGTAACAAAGTTACAGACCTGTCGTTGACCTACTTCAAGCGGTGCGGAAACATTTGTCACATTGACCTGCGGTACTGCAAACAGGTGACCAAAGAGGGCTGTGAGCAGTTCATCGCAGAGATGTCTGTCAGCGTGCAGTTCAGACTGACTGAAGAAAAACTACTGAGCAAACTGAGCTAGTCAACAAAGACACACTGACAATAACTTGACCTAGAACCCAGGGAACTAACAATTTCAACCCTCCATTTTCTACGCTTTTTCAACACCGGATGTGTGGAGCCTAACACACTCAACAGAAAACCAGCAAAGAGAAAAACGGCATATTGCTAAACGGCACACTCCAAGCAAATGCCTGAACTCAACATCACAGCTCTCAAGTGAAGAAATGTATTCATCTCTGGTGGCCAATTCAGCCTTTCGACctgtttattgttttcaatTTGTTTATGTTGTGCTGCTAAGGCAAACTTTTATTGGTTTTTTACGTTTACAAGGCACGGCTAGCAGAGCGTGCGAACGTTAAAATGCTGTTGAAAGGcatgtttattcatatattttgcataaatgttatatagatatatatgaaAAAGAGGTTTTATAGTCACACGGTGCAGTGTTGCAGTGACAAAAACCGACTGTTATTTTCTTTCTCGGaaaagaaaaattcaaaatgcatgTGCTTTTTTCGTTACCATGCAAACGTTAAGCGTCATGCAGTGTTAATTTTTGTATCAGAAGGGATTTCACACTTTATGTGCAGTATTAAATGCactcatataaatatatatatatatagactttaTTGACAGTATTCAGTCAGtacaaagtttatttttttttctacgcaGTAGGAAGTAAAGCAGATCCTATCTATACTAGCTATAGTAACTGTGcagatgtttttgtaatgttaatttaagaTGTAATGTCTTCTAATGTTATAAGATGTTCTACAGGTACATTCTCTTTTCCATATTACTTACCTGGGCTtctttaatatgtatatatctgGGGGAAAGAAGTATTTGCACTGTTTGACCTGaataaatactgatattttttccagtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251962.1 lncRNA downstream 45092 16098995 ~ 16101344 (-) True LOC122353141
TU115092 lncRNA downstream 158949 15935553 ~ 15987487 (-) True G77820
TU115098 lncRNA downstream 214785 15931346 ~ 15931651 (-) True G77821
TU115108 lncRNA downstream 218119 15928092 ~ 15928317 (-) True G77831
TU115107 lncRNA downstream 218938 15927186 ~ 15927498 (-) True G77830
TU115278 lncRNA upstream 6897 16172478 ~ 16174807 (-) True morn3
TU115297 lncRNA upstream 13019 16178600 ~ 16179895 (-) True G77936
XR_006251894.1 lncRNA upstream 23953 16189534 ~ 16193540 (-) False LOC122352611
XR_006251893.1 lncRNA upstream 23953 16189534 ~ 16193540 (-) True LOC122352611
TU115292 lncRNA upstream 23979 16189560 ~ 16192991 (-) False LOC122352611
XM_043250855.1 mRNA downstream 51080 16081970 ~ 16095356 (-) True ggt1b
XM_043250963.1 mRNA downstream 101039 16030527 ~ 16045397 (-) True cabp1b
XM_043249902.1 mRNA upstream 8170 16173751 ~ 16177111 (-) False morn3
XM_043250444.1 mRNA upstream 18273 16183854 ~ 16187960 (-) True rhof
XM_043251192.1 mRNA upstream 44167 16209748 ~ 16213685 (-) True car15
XM_043250866.1 mRNA upstream 51445 16217026 ~ 16227175 (-) True dgcr2
XM_043250243.1 mRNA upstream 61738 16227319 ~ 16232580 (-) True ess2
unassigned_transcript_1474 other downstream 27414 16118952 ~ 16119022 (-) True trnag-gcc_66
unassigned_transcript_1473 other downstream 27580 16118786 ~ 16118856 (-) True trnag-gcc_65
XR_006251960.1 other downstream 89129 16030527 ~ 16057307 (-) False cabp1b
TU115119 other downstream 128666 16016671 ~ 16017770 (-) False LOC122352931
TU115089 other downstream 249338 15893683 ~ 15897098 (-) False npffr1l1

Expression Profile