RNA id: XM_043249930.1


Basic Information

Item Value
RNA id XM_043249930.1
length 4071
RNA type mRNA
GC content 0.38
exon number 10
gene id arfip2b
representative True

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 10036639 ~ 10048457 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCATTTCGGGCTACTGGAGGCTGATTCGCCCAATAATACAAACAAGCCGCCGGACATAGTGGAAACGGTTGAACATGCGAAAAGCCGTTTGCTTATGAATTAACAAATTCAGCCTCCATGAATGCATGCTTTTGGTATTTCCGCACTCTTTTGGAAGTGGCAGGGTATAATTGCGCATGAACTGGGATACATTATCCAGCACGCGTGACAAATAGCTAATCCTGCAATAGGAAATATACAGtaACACTACAGTATGGCAGACAGTATGATGAGTAAAGCAGCCACTATGGAGATTCCTATTAACAGTAATGGGGACTCTAGGAATCTGGCCGAAGATGACAGCCTGGAGCAGGCTGCAAAGATTCAGTGGAGCTTAAGAGAGAAGGTAGGGAGTCCCACAGGCCTCAGGGACTTACAGCAGGTCATGGTGTCGGGGCCCAACCTAAATGAGACCAGCATTGTATCAGGTGGTTATGGAGGTACAACAGAAGGCATCATTCCGACCAGCTCCATCAAAGACCTGCGAATGAAGTCTAGGGGTGTTAGCATTGCCTCAAGCCAGATTGCTGCCTGCCGAATAGCCCACCAATCAGAAGACATCCCCTGTGTCCCAGGGTCCAACATGCATCACGGCAGTAGCAATTCGTCCATGACAGCAGAAGAGGCCACAAGAGGTGTTGCTGTGGAGAAATTTGACATCATGAAGAAATGGGGCCTGAACACATATAAGTGCACCAAACAGATGATCTCTGAGAGGTTTGGCCGTGGCTCACGTACTGTGGATTTGGAGCTGGAGGCTCAGATCGAGGTTCTGCGGGAAACCAAACGGAAGTACGAGAATGTGCTGCATTTGGCGCGAGCGCTAACCAACCACTTTTACAGCATGGTGCAGACGCAGCACGCCCTCGGAGACACTTTTGCTGACCTCAGTCAGAAGTCTCCAGAACTTCGGGATGAGTTTGGATACAATGCAGAAACACAGAAGTTGTTGTGCAAGAATGGAGAGACTCTGCTCGGTGCCATCAACTTCTTTGTGTCCAGCATCAACACACTGGTGAACAAAACAATGGAAGACACGTTGATGACTATCAAGATGTATGAGAATGCCAGACTAGAGTTCGATGCATACAGGGCAGATCTGGAAGAGTTGAATATGGGCCCACGGGACGCTGTTACTATGGCTCGTATCGAGGCTGCTCAGCAGCAGTACCAGATCCACAAAGACAAATATGAACGTCTCCGCAGTGATGTCAGCATCAAGCTCAAGTTCCTGGAAGAAAACAAGGTCAAAGTGATGCACAAGCAACTTCTGCTGTTCCATAATGCCATCTCTGCCTACTTTGCTGGAAACCAGCAACAGCTGGAACAGACCCTCAAGCAGTTCAACATTAAACTCAAACCACCAGGGGCTGACAAACCTTCTTGGCTGGAGGAACAGTGAAAGTGCCCATTTACCCCATTATATGTCTTTAGCCATACAGAGCAACACAGTAGGACCACAAGAGACCAGCGTTCTGAGATGCTAGCAGAGACAGGGGCTCCAACAGAGCCTCCTTCACACTAACTCTCTCTATACTTCTCTTCCTTGattctttttctcctcctcttcaaCCTGTTCTTGCTCTGAGACTGTCTTCAAGTGTCTGAATAGTCACCTCTAATATGTAACCGGTCCTAAAGGCTTCAATCAAATGTCAAAGGTATCAGTTTCAGCTTCACCCCTATAAATATCATTAATCCAACTGAAACAATCCTTCTGATATATCAGTCAGAGCAGCTGTTTTTTCCAGATTATCCTCAGTCttacactctctctttctctgtcagtgACCACGTCTTTAGGAActcttctttgtttttctgtgaaaagCGTTTTATTTTGCTACTAATGtcttttttctgtaatgtaGATTTGGTCTTGTAGCTAATGGGGGATGCAAATTATTCCTATCACAGAGCTTTCAGTGTTCAGTGTCGGTGATTCtaacaaagttattttattttgataaaattcAGATATAGTTTTATCTGATATTGGTATTGCATCCTTGTACATTTGTATGTTTACTAGGCTATGGCTGTACTGGCGAGTCAATCCTTGTTCAGTTGTCTAGAATACTTTGAATACATGAAGTACTACATTTGATAtcttaaaatgagaaatttaacctcaaaataataatactgaaaaatgtCATGGACTGAATTTCATCAGCTGTGGGTACAGTTTCCTGCACGTTTTTCCAGAAGTTCCAGAACATTAATCTAAAATCACTGTCTTTACTCAATATTGTTAATTTACAGCTTTAAATTTATGAAGCATGATTGTTTTCTCTAAaggaaaggatttttttttccagatttattttgacaattatAGTTCCAATAGTCATTATGTTCCAATGCATAATGCCAtagaatgtttgtttatttttaagttaatcaTAAATTAATCAAGGATGTGTATGTATGACttgtatttgattgtttttaacatgGGCCAGTTTTTGAGGTCCGTTGTTACCTGCCTCTTTATCCACCAAAATGTGCACTAGAGTTTCTGTACTAAACTGTGTTCTGTTAACATCAGCAAAGCCCTAATATTGTGCATTCAAATTGCGATTGGTTCTGATGCACCCTGTTAAATGCCTTTATCTGccttggtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatccacaatgaaatatttatatacccATTAAATTCACAGTAACATAACACTGTCATTAGTTCTAATGTATTATTCCATTACCCTCACAAAAAATATAGTACAAAATCAAATCGATTTTGTAgtaatttaacaatataaacatttcaaaatatatattttttgtatgcatttttatttgtgattagATGGTACACTAtaatcaaattttcatttactgaaaatatctACATAATGCTCatttatagtcttttttttctataaattaGCAAGGTTTTTTTATGTACTCAAAATACACTTAGACGtgttgtttttgcttaaaacagaCTTGATGCAGTGACAATGGTTAGAGTGCAGGCCGTCAGATTATAGTTTGTCAgactagttttattttttatttcattactcaAGATTGAAATAATTACGATCTAATGTTCCGTACTTTTGAACATTGCACTAAATCTTTCTGAGCTTGAGATGAAGCAATATTGAAGATGTTTTTAGAAAGCGTATTTTCATGTATGCCTATATTGGCTGTCCCTCGTGTGTTTCTGCATGGCAGGTCTGATTAGTTGTACATTTCCATGCATTGTGATTCAATCCTGTTCAATGTATCAGTAAAGCACTACATGGGTAGTAGTGCAGCAAAACGTTTCTAGTAAAACAAACGGAAAGGTTTCTTGTATATGTTAAAGAATGGCTTGAATTTTCGTTTAAATGTCAATTGtcaactgttattattattttaattatttgtgttaaattacatttaaattaatagctTAAATTCATTTAGATTATAAGGACcacatggtaaccctagaagataattttttttttaatcaagtatttagttttttatgtcctgtttttgtttgtcaggCTGCAGTGATTATTTTCATGTTCAGATCTGGAGAAAAGGGTTCCATCTTGAGCCCCGAGACTGAATTGATTCAGTGATGCACATTTGTACCAGACCAATGGGATTTTAAATTTAGACACACCTTTTCTTTTAGATCAAATGCATCtattaggggtttttttttaattattattattattattactattctgGGATTATTGTTCTATTATTTAGATTTCTGTTAACAGAAGTGTTTGACATTGAAATGCGTACCCCATTAGTAGTTTTAGATAATAGCAGAATGAAAGggttataaatattaacatatttatacaaTCAATATTTTAGGCTGCTTTGTGGTATTGTAGTTTATGAATGattgtatatatgtaaagaTAATTGACAGATTTTGAAACTGGAAACCCATGATGTTAGCCTTTGCTCCTGGCTTTGACCAAACCTTTGACCAACGTACAAGAACCCAACAGATAAAATTTGAAAAGTTTGCAAAATGG

Function

GO:

id name namespace
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K20314 ARFIP; arfaptin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112929 lncRNA downstream 12938 10023495 ~ 10023701 (-) True G76324
TU112807 lncRNA downstream 212470 9823035 ~ 9824169 (-) True G76233
XR_006251940.1 lncRNA downstream 273148 9761809 ~ 9763491 (-) True LOC122352923
TU112803 lncRNA downstream 319226 9717033 ~ 9717413 (-) True G76229
TU112798 lncRNA downstream 325931 9702688 ~ 9710708 (-) False G76225
TU112932 lncRNA upstream 49808 10098265 ~ 10106179 (-) True G76327
TU113040 lncRNA upstream 135637 10184094 ~ 10184522 (-) True G76388
TU113066 lncRNA upstream 193502 10241959 ~ 10242182 (-) True G76413
TU113074 lncRNA upstream 204568 10253025 ~ 10253861 (-) True G76421
TU113081 lncRNA upstream 268614 10317071 ~ 10317400 (-) True G76426
XM_043249982.1 mRNA downstream 446 10028731 ~ 10036193 (-) True fhdc3
XM_043250577.1 mRNA downstream 8983 10001337 ~ 10027656 (-) False trim3b
XM_043250576.1 mRNA downstream 13296 10001337 ~ 10023343 (-) True trim3b
XM_043250578.1 mRNA downstream 20752 10001337 ~ 10015887 (-) False trim3b
XM_043250575.1 mRNA downstream 20752 10001337 ~ 10015887 (-) False trim3b
XM_043249926.1 mRNA upstream 18014 10066471 ~ 10158893 (-) True dchs1b
XM_043250851.1 mRNA upstream 136337 10184794 ~ 10191230 (-) True LOC122353016
XM_043250135.1 mRNA upstream 219070 10267527 ~ 10283665 (-) False fgf13b
XM_043250131.1 mRNA upstream 241075 10289532 ~ 10303026 (-) False LOC122352632
XM_043250132.1 mRNA upstream 241075 10289532 ~ 10303024 (-) False LOC122352632
XR_006251964.1 other downstream 411234 9589980 ~ 9625405 (-) False LOC122353179
TU112582 other downstream 606839 9427962 ~ 9429800 (-) True G76068
TU112377 other downstream 1480551 8545367 ~ 8556088 (-) False G75913
TU112375 other downstream 1490487 8543097 ~ 8546152 (-) False G75913
XR_006251935.1 other downstream 1509193 8520681 ~ 8527446 (-) False smtna
TU113078 other upstream 218897 10267354 ~ 10277701 (-) True fgf13b
TU113101 other upstream 331639 10380096 ~ 10383309 (-) True G76438
TU113102 other upstream 331639 10380096 ~ 10381047 (-) False G76438
TU113103 other upstream 331639 10380096 ~ 10383309 (-) False G76438
TU113196 other upstream 429602 10478059 ~ 10480189 (-) True G76498

Expression Profile